Environmental microbiome mapping as a strategy to improve quality and safety in the food industry

The influence of a swab type on the results of point-of-care tests

(2020) Aleksandra Anna Zasada et al.   AMB Express

Tracking the Dairy Microbiota from Farm Bulk Tank to Skimmed Milk Powder

(2020) Aoife J. McHugh et al.   mSystems

What Is Metagenomics Teaching Us, and What Is Missed?

(2020) Felicia N. New et al.   Annual Review of Microbiology

Influence of physicochemical surface properties on the adhesion of bacteria onto four types of plastics

(2019) Li Cai et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Viable and total bacterial populations undergo equipment- and time-dependent shifts during milk processing

(2019) Mary E. Kable et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Long-read sequencing in deciphering human genetics to a greater depth

(2019) Mohit K. Midha et al.   HUMAN GENETICS

Generating amplicon reads for microbial community assessment with next‐generation sequencing

(2019) M. Gołębiewski et al.   JOURNAL OF APPLIED MICROBIOLOGY

The occurrence of Listeria monocytogenes is associated with built environment microbiota in three tree fruit processing facilities

(2019) Xiaoqing Tan et al.   Microbiome

Farm-to-fork profiling of bacterial communities associated with an artisan cheese production facility

(2019) Justin Falardeau et al.   FOOD MICROBIOLOGY

A Sticking Point in Assessing Bacterial Contamination: Adhesive Characters of Bacterial Specializations, Swab Features, and Fomite Surface Properties Skew Colony Counts

(2019) Vicki Abrams Motz et al.   JOURNAL OF PURE AND APPLIED MICROBIOLOGY

Autochthonous facility-specific microbiota dominates washed-rind Austrian hard cheese surfaces and its production environment

(2018) Narciso M. Quijada et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The Extraction and Recovery Efficiency of Pure DNA for Different Types of Swabs

(2018) Brigitte B. Bruijns et al.   JOURNAL OF FORENSIC SCIENCES

Recent Past, Present, and Future of the Food Microbiome

(2018) Francesca De Filippis et al.   Annual Review of Food Science and Technology

Impact of sequencing depth on the characterization of the microbiome and resistome

(2018) Rahat Zaheer et al.   Scientific Reports

Effect of the environment microbiota on the flavour of light-flavour Baijiu during spontaneous fermentation

(2018) Xiao-Na Pang et al.   Scientific Reports

Naturally Fermented Milk From Northern Senegal: Bacterial Community Composition and Probiotic Enrichment With Lactobacillus rhamnosus

(2018) Megan Parker et al.   Frontiers in Microbiology

Exploring the microbiota of the red-brown defect in smear-ripened cheese by 454-pyrosequencing and its prevention using different cleaning systems

(2017) Raffaele Guzzon et al.   FOOD MICROBIOLOGY

Overlap of Spoilage-Associated Microbiota between Meat and the Meat Processing Environment in Small-Scale and Large-Scale Retail Distributions

(2016) Giuseppina Stellato et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial communities in dairy processing environment floor-drains are dominated by product-associated bacteria and yeasts

(2016) Kerstin Schön et al.   FOOD CONTROL

Relationships among house, rind and core microbiotas during manufacture of traditional Italian cheeses at the same dairy plant

(2016) Maria Calasso et al.   FOOD MICROBIOLOGY

Bacterial diversity of floor drain biofilms and drain waters in a Listeria monocytogenes contaminated food processing environment

(2016) Monika Dzieciol et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Contamination of salmon fillets and processing plants with spoilage bacteria

(2016) Trond Møretrø et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Inhibition of Staphylococcus aureus by antimicrobial biofilms formed by competitive exclusion microorganisms on stainless steel

(2016) Hyeri Son et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The Core and Seasonal Microbiota of Raw Bovine Milk in Tanker Trucks and the Impact of Transfer to a Milk Processing Facility

(2016) Mary E. Kable et al.   mBio

Processing Environment and Ingredients Are Both Sources of Leuconostoc gelidum, Which Emerges as a Major Spoiler in Ready-To-Eat Meals

(2015) Vasileios Pothakos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Coexistence of Lactic Acid Bacteria and Potential Spoilage Microbiota in a Dairy Processing Environment

(2015) Giuseppina Stellato et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Meat Processing Plant Microbiome and Contamination Patterns of Cold-Tolerant Bacteria Causing Food Safety and Spoilage Risks in the Manufacture of Vacuum-Packaged Cooked Sausages

(2015) Jenni Hultman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

House microbiotas as sources of lactic acid bacteria and yeasts in traditional Italian sourdoughs

(2015) Fabio Minervini et al.   FOOD MICROBIOLOGY

Mapping microbial ecosystems and spoilage-gene flow in breweries highlights patterns of contamination and resistance

(2015) Nicholas A Bokulich et al.   eLife

Indigenous Bacteria and Fungi Drive Traditional Kimoto Sake Fermentations

(2014) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Facility-Specific “House” Microbiome Drives Microbial Landscapes of Artisan Cheesemaking Plants

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Monitoring Seasonal Changes in Winery-Resident Microbiota

(2013) Nicholas A. Bokulich et al.   PLoS One

Exploring the Sources of Bacterial Spoilers in Beefsteaks by Culture-Independent High-Throughput Sequencing

(2013) Francesca De Filippis et al.   PLoS One

Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses

(2011) Kyoung-Ho Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multiple displacement amplification compromises quantitative analysis of metagenomes

(2010) Suzan Yilmaz et al.   NATURE METHODS

Control of Microbial Adhesion as a Strategy for Food and Bioprocess Technology

(2009) Emiliane Andrade Araújo et al.   Food and Bioprocess Technology