Bridging Rare and Abundant Bacteria with Ecosystem Multifunctionality in Salinized Agricultural Soils: from Community Diversity to Environmental Adaptation

Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes

(2020) Yuting Liang et al.   ENVIRONMENTAL MICROBIOLOGY

Carbon Use Efficiency and Its Temperature Sensitivity Covary in Soil Bacteria

(2020) Grace Pold et al.   mBio

Antagonistic pleiotropy conceals molecular adaptations in changing environments

(2020) Piaopiao Chen et al.   Nature Ecology & Evolution

Divergent co-occurrence patterns and assembly processes structure the abundant and rare bacterial communities in a salt marsh ecosystem

(2020) Shicong Du et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Critical transition of soil bacterial diversity and composition triggered by nitrogen enrichment

(2020) Weixing Liu et al.   ECOLOGY

Distinct assembly mechanisms underlie similar biogeographical patterns of rare and abundant bacteria in Tibetan Plateau grassland soils

(2020) Mukan Ji et al.   ENVIRONMENTAL MICROBIOLOGY

Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields

(2020) Shuo Jiao et al.   GLOBAL CHANGE BIOLOGY

Spatial differences in soil microbial diversity caused by pH ‐driven organic phosphorus mineralization

(2020) Wenjie Wan et al.   LAND DEGRADATION & DEVELOPMENT

Biogeography and diversity patterns of abundant and rare bacterial communities in rice paddy soils across China

(2020) Jinyu Hou et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

(2020) Franziska Wemheuer et al.   Environmental Microbiome

Effects of nitrogen and phosphorus addition on microbial community composition and element cycling in a grassland soil

(2020) Meike Widdig et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dispersal limitation driving phoD-harboring bacterial community assembly: A potential indicator for ecosystem multifunctionality in long-term fertilized soils

(2020) Wenjie Wan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Environment and evolutionary history shape phylogenetic turnover in European tetrapods

(2019) Bianca Saladin et al.   Nature Communications

Core Microbiota in Agricultural Soils and Their Potential Associations with Nutrient Cycling

(2019) Shuo Jiao et al.   mSystems

Salinity Is a Key Determinant for Soil Microbial Communities in a Desert Ecosystem

(2019) Kaoping Zhang et al.   mSystems

Functional Metagenomics Reveals an Overlooked Diversity and Novel Features of Soil-Derived Bacterial Phosphatases and Phytases

(2019) Genis Andrés Castillo Villamizar et al.   mBio

Rare taxa of alkaline phosphomonoesterase-harboring microorganisms mediate soil phosphorus mineralization

(2019) Xiaomeng Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Linking Microbial Community Structure to Trait Distributions and Functions Using Salinity as an Environmental Filter

(2019) Kristin M. Rath et al.   mBio

Evolutionary history constrains microbial traits across environmental variation

(2019) Ember M. Morrissey et al.   Nature Ecology & Evolution

Arbuscular mycorrhizal fungi in European grasslands under nutrient pollution

(2019) Tobias Ceulemans et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Developing strategies to recover crop productivity after soil compaction—A plant eco-physiological perspective

(2019) Tino Colombi et al.   SOIL & TILLAGE RESEARCH

Contrasting responses of diazotrophic specialists, opportunists, and generalists to steppe types in Inner Mongolia

(2019) Yansu Wang et al.   CATENA

Soil pH and temperature regulate assembly processes of abundant and rare bacterial communities in agricultural ecosystems

(2019) Shuo Jiao et al.   ENVIRONMENTAL MICROBIOLOGY

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Resuscitation of functional bacterial community for enhancing biodegradation of phenol under high salinity conditions based on Rpf

(2018) Xiaomei Su et al.   BIORESOURCE TECHNOLOGY

Deciphering the associations between soil microbial diversity and ecosystem multifunctionality driven by long-term fertilization management

(2018) Gongwen Luo et al.   FUNCTIONAL ECOLOGY

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Grass and maize vegetation systems restore saline-sodic soils in the Songnen Plain of northeast China

(2018) Shasha Luo et al.   LAND DEGRADATION & DEVELOPMENT

Linking bacterial community composition to soil salinity along environmental gradients

(2018) Kristin M. Rath et al.   ISME Journal

Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions

(2018) Youzhi Feng et al.   MOLECULAR ECOLOGY

Coastal climate change, soil salinity and human migration in Bangladesh

(2018) J. Chen et al.   Nature Climate Change

Effect of cropping systems after abandoned salinized farmland reclamation on soil bacterial communities in arid northwest China

(2018) Zhibo Cheng et al.   SOIL & TILLAGE RESEARCH

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

The impact of salinity on the microbial response to drying and rewetting in soil

(2017) Kristin M. Rath et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits

(2017) Alexander B. Chase et al.   mBio

Crop yield prediction under soil salinity using satellite derived vegetation indices

(2016) Onur Satir et al.   FIELD CROPS RESEARCH

Identifying the microbial taxa that consistently respond to soil warming across time and space

(2016) Angela M. Oliverio et al.   GLOBAL CHANGE BIOLOGY

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

(2016) James C. Stegen et al.   Nature Communications

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Environment and evolutionary history determine the global biogeography of phytoplankton temperature traits

(2015) Mridul K. Thomas et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Predicting microbial traits with phylogenies

(2015) Marta Goberna et al.   ISME Journal

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Comparison of three DNA extraction methods for recovery of soil protist DNA

(2015) Susana S. Santos et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

The links between ecosystem multifunctionality and above- and belowground biodiversity are mediated by climate

(2015) Xin Jing et al.   Nature Communications

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils

(2015) Ember M. Morrissey et al.   Frontiers in Microbiology

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes

(2013) H. Mori et al.   DNA RESEARCH

Niche conservatism constrains Australian honeyeater assemblages in stressful environments

(2013) E. T. Miller et al.   ECOLOGY LETTERS

Salinity affects microbial activity and soil organic matter content in tidal wetlands

(2013) Ember M. Morrissey et al.   GLOBAL CHANGE BIOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Changes of soil physico-chemical properties and enzyme activities in relation to grassland salinization

(2012) Chengchen Pan et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Phylogenetic niche conservatism: what are the underlying evolutionary and ecological causes?

(2012) Michael D. Crisp et al.   NEW PHYTOLOGIST

Response of microbial activity and biomass to increasing salinity depends on the final salinity, not the original salinity

(2012) Nan Yan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial salt tolerance is unrelated to soil salinity across an arid agroecosystem salinity gradient

(2011) Johannes Rousk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A new method for detecting and interpreting biodiversity and ecological community thresholds

(2010) Matthew E. Baker et al.   Methods in Ecology and Evolution

Osmotic responses ofDunaliellato the changes of salinity

(2009) Hui Chen et al.   JOURNAL OF CELLULAR PHYSIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION