Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle

Co-expression network analysis predicts a key role of microRNAs in the adaptation of the porcine skeletal muscle to nutrient supply

(2020) Emilio Mármol-Sánchez et al.   Journal of Animal Science and Biotechnology

Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs

(2019) Deborah Velez-Irizarry et al.   BMC GENOMICS

Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development

(2018) Shu-Juan Xie et al.   CELL DEATH AND DIFFERENTIATION

Integrated Analysis of MiRNA and Genes Associated with Meat Quality Reveals that Gga-MiR-140-5p Affects Intramuscular Fat Deposition in Chickens

(2018) Meng Zhang et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Comparative analyses of longissimus muscle miRNAomes reveal microRNAs associated with differential regulation of muscle fiber development between Tongcheng and Yorkshire pigs

(2018) Yu Xi et al.   PLoS One

Evidence for a potential role of miR-1908-5p and miR-3614-5p in autoimmune disease risk using integrative bioinformatics

(2018) Inken Wohlers et al.   JOURNAL OF AUTOIMMUNITY

MIR-190B Alleviates Cell Autophagy and Burn-Induced Skeletal Muscle Wasting via Modulating PHLPP1/AKT/FOXO3A Signaling Pathway

(2018) Yonghui Yu et al.   SHOCK

Genome-wide association study in an F2 Duroc x Pietrain resource population for economically important meat quality and carcass traits1

(2017) S. Casiró et al.   JOURNAL OF ANIMAL SCIENCE

MicroRNA-95 promotes myogenic differentiation by down-regulation of aminoacyl-tRNA synthase complex-interacting multifunctional protein 2

(2017) Biao Li et al.   Oncotarget

Identification and characterization of differentially expressed miRNAs in subcutaneous adipose between Wagyu and Holstein cattle

(2017) Yuntao Guo et al.   Scientific Reports

Age-related changes in miR-143-3p:Igfbp5 interactions affect muscle regeneration

(2016) Ana Soriano-Arroquia et al.   AGING CELL

Molecular alterations induced by a high-fat high-fiber diet in porcine adipose tissues: variations according to the anatomical fat location

(2016) Florence Gondret et al.   BMC GENOMICS

Muscle-specific microRNAs in skeletal muscle development

(2016) Martin Horak et al.   DEVELOPMENTAL BIOLOGY

miR-143 regulates proliferation and differentiation of bovine skeletal muscle satellite cells by targeting IGFBP5

(2016) Wei Ran Zhang et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-ANIMAL

microRNA-128 regulates the proliferation and differentiation of bovine skeletal muscle satellite cells by repressing Sp1

(2016) Yang Dai et al.   MOLECULAR AND CELLULAR BIOCHEMISTRY

Deciphering the microRNA transcriptome of skeletal muscle during porcine development

(2016) Miaomiao Mai et al.   PeerJ

MicroRNA-128 targets myostatin at coding domain sequence to regulate myoblasts in skeletal muscle development

(2015) Lei Shi et al.   CELLULAR SIGNALLING

MicroRNAs Regulate Cellular ATP Levels by Targeting Mitochondrial Energy Metabolism Genes during C2C12 Myoblast Differentiation

(2015) Puntita Siengdee et al.   PLoS One

Differential miRNA expression profiles in the longissimus dorsi muscle between intact and castrated male pigs

(2015) Zhaowei Cai et al.   RESEARCH IN VETERINARY SCIENCE

Genome-wide identification of microRNA expression quantitative trait loci

(2015) Tianxiao Huan et al.   Nature Communications

miR-140-5p regulates adipocyte differentiation by targeting transforming growth factor-β signaling

(2015) Xin Zhang et al.   Scientific Reports

Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs

(2015) Lu Jing et al.   Scientific Reports

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

Serum Profiling Identifies Novel Muscle miRNA and Cardiomyopathy-Related miRNA Biomarkers in Golden Retriever Muscular Dystrophy Dogs and Duchenne Muscular Dystrophy Patients

(2014) Laurence Jeanson-Leh et al.   AMERICAN JOURNAL OF PATHOLOGY

Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations

(2014) Jose L Gualdrón Duarte et al.   BMC BIOINFORMATICS

MiRNA let-7g regulates skeletal myoblast motility via Pinch-2

(2014) S. Boudoukha et al.   FEBS LETTERS

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Autocrine role of interleukin-13 on skeletal muscle glucose metabolism in type 2 diabetic patients involves microRNA let-7

(2013) Lake Q. Jiang et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Transcriptional profiling and miRNA-dependent regulatory network analysis of longissimus dorsi muscle during prenatal and adult stages in two distinct pig breeds

(2013) P. Siengdee et al.   ANIMAL GENETICS

A genome-wide integrative study of microRNAs in human liver

(2013) Eric R Gamazon et al.   BMC GENOMICS

Integrative Analysis of Porcine microRNAome during Skeletal Muscle Development

(2013) Lijun Qin et al.   PLoS One

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Maternal obesity downregulates microRNA let-7g expression, a possible mechanism for enhanced adipogenesis during ovine fetal skeletal muscle development

(2012) X Yan et al.   INTERNATIONAL JOURNAL OF OBESITY

Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma

(2011) Hua Dong et al.   BMC Systems Biology

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Linkage Analysis of Global Gene Expression in Loin Muscle Tissue Identifies Candidate Genes in Pigs

(2011) Juan Pedro Steibel et al.   PLoS One

A C/T mutation in microRNA target sites in BMP5 gene is potentially associated with fatness in pigs

(2010) G.C. Shao et al.   MEAT SCIENCE

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Overlapping Functions of Nuclear Envelope Proteins NET25 (Lem2) and Emerin in Regulation of Extracellular Signal-Regulated Kinase Signaling in Myoblast Differentiation

(2009) M. D. Huber et al.   MOLECULAR AND CELLULAR BIOLOGY

Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology

(2009) Antonio M. Ramos et al.   PLoS One

Selective Transcriptional Profiling and Data Analysis Strategies for Expression Quantitative Trait Loci Mapping in Outbred F 2 Populations

(2008) Fernando F. Cardoso et al.   GENETICS

IGFBP-5 regulates muscle cell differentiation by binding to IGF-II and switching on the IGF-II auto-regulation loop

(2008) Hongxia Ren et al.   JOURNAL OF CELL BIOLOGY

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Genetical Genomics: Spotlight on QTL Hotspots

(2008) Rainer Breitling et al.   PLoS Genetics

Quantitative trait loci mapping in an F2 Duroc × Pietrain resource population: I. Growth traits1

(2007) D. B. Edwards et al.   JOURNAL OF ANIMAL SCIENCE

Quantitative trait locus mapping in an F2 Duroc × Pietrain resource population: II. Carcass and meat quality traits1

(2007) D. B. Edwards et al.   JOURNAL OF ANIMAL SCIENCE

Progress in reducing the pale, soft and exudative (PSE) problem in pork and poultry meat

(2007) S. Barbut et al.   MEAT SCIENCE