Identification of Silkworm Hemocyte Subsets and Analysis of Their Response to Baculovirus Infection Based on Single-Cell RNA Sequencing

A single-cell atlas of the developing Drosophila ovary identifies follicle stem cell progenitors

(2020) Maija Slaidina et al.   GENES & DEVELOPMENT

Analysis of lncRNA-mediated gene regulatory network of Bombyx mori in response to BmNPV infection

(2020) Shaolun Zhang et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

A cell atlas of the adult Drosophila midgut

(2020) Ruei-Jiun Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Immune priming: the secret weapon of the insect world

(2020) Gerard Sheehan et al.   Virulence

Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)-driven pulmonary immunopathogenesis

(2020) Junsong Zhang et al.   PLoS Pathogens

Temporal specificity and heterogeneity of Drosophila immune cells

(2020) Pierre B Cattenoz et al.   EMBO JOURNAL

One too many: the surprising heterogeneity of Drosophila macrophages

(2020) Volker Hartenstein   EMBO JOURNAL

The piRNA response to BmNPV infection in the silkworm fat body and midgut

(2020) Min Feng et al.   Insect Science

A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis

(2020) Allison Jevitt et al.   PLOS BIOLOGY

A single-cell survey of Drosophila blood

(2020) Sudhir Gopal Tattikota et al.   eLife

Single-Cell Sequencing of Peripheral Mononuclear Cells Reveals Distinct Immune Response Landscapes of COVID-19 and Influenza Patients

(2020) Linnan Zhu et al.   IMMUNITY

COVID-19 severity correlates with airway epithelium–immune cell interactions identified by single-cell analysis

(2020) Robert Lorenz Chua et al.   NATURE BIOTECHNOLOGY

A single-cell atlas of the peripheral immune response in patients with severe COVID-19

(2020) Aaron J. Wilk et al.   NATURE MEDICINE

Single-cell transcriptome maps of myeloid blood cell lineages in Drosophila

(2020) Bumsik Cho et al.   Nature Communications

Fast interpolation-based t-SNE for improved visualization of single-cell RNA-seq data

(2019) George C. Linderman et al.   NATURE METHODS

Cell death: a review of the major forms of apoptosis, necrosis and autophagy

(2019) Mark S D’Arcy   CELL BIOLOGY INTERNATIONAL

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Caspase-8 is the molecular switch for apoptosis, necroptosis and pyroptosis

(2019) Melanie Fritsch et al.   NATURE

SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm

(2019) Fang Lu et al.   NUCLEIC ACIDS RESEARCH

Quantitative label-free proteomic analysis reveals differentially expressed proteins in the digestive juice of resistant versus susceptible silkworm strains and their predicted impacts on BmNPV infection

(2019) Shang-zhi Zhang et al.   Journal of Proteomics

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

(2018) Kristofer Davie et al.   CELL

Comparative transcriptome analysis of a Trichoplusia ni cell line reveals distinct host responses to intracellular and secreted protein products expressed by recombinant baculoviruses

(2018) Krisztina Koczka et al.   JOURNAL OF BIOTECHNOLOGY

Defense Mechanisms against Viral Infection in Drosophila: RNAi and Non-RNAi

(2018) Luc Swevers et al.   Viruses-Basel

Dissection of Influenza Infection In Vivo by Single-Cell RNA Sequencing

(2018) Yael Steuerman et al.   Cell Systems

Circular RNA alterations in the Bombyx mori midgut following B. mori nucleopolyhedrovirus infection

(2018) Xiaolong Hu et al.   MOLECULAR IMMUNOLOGY

Dimensionality reduction for visualizing single-cell data using UMAP

(2018) Etienne Becht et al.   NATURE BIOTECHNOLOGY

Transgenic characterization of two silkworm tissue-specific promoters in the haemocyte plasmatocyte cells

(2017) K. Zhang et al.   INSECT MOLECULAR BIOLOGY

iTRAQ-based quantitative proteomics analysis of molecular mechanisms associated with Bombyx mori (Lepidoptera) larval midgut response to BmNPV in susceptible and near-isogenic strains

(2017) Haizhong Yu et al.   Journal of Proteomics

The diversity of insect antiviral immunity: insights from viruses

(2016) João T Marques et al.   CURRENT OPINION IN MICROBIOLOGY

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Transcriptomic Analysis of Resistant and Susceptible Bombyx mori Strains Following BmNPV Infection Provides Insights into the Antiviral Mechanisms

(2016) Gang Li et al.   International Journal of Genomics

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Transcriptome Analysis of Bombyx mori Larval Midgut during Persistent and Pathogenic Cytoplasmic Polyhedrosis Virus Infection

(2015) Anna Kolliopoulou et al.   PLoS One

A novel granulocyte-specific α integrin is essential for cellular immunity in the silkworm Bombyx mori

(2014) Kui Zhang et al.   JOURNAL OF INSECT PHYSIOLOGY

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

The cell-mediated immunity of Drosophila melanogaster: Hemocyte lineages, immune compartments, microanatomy and regulation

(2013) Viktor Honti et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Insect Antiviral Innate Immunity: Pathways, Effectors, and Connections

(2013) Megan B. Kingsolver et al.   JOURNAL OF MOLECULAR BIOLOGY

Genome scale analysis of differential mRNA expression of Helicoverpa zea insect cells infected with a H. armigera baculovirus

(2013) Quan Nguyen et al.   VIROLOGY

Genome Scale Transcriptomics of Baculovirus-Insect Interactions

(2013) Quan Nguyen et al.   Viruses-Basel

An analysis of the structural and functional similarities of insect hemocytes and mammalian phagocytes

(2013) Niall Browne et al.   Virulence

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments

(2012) Andrew McDavid et al.   BIOINFORMATICS

The insect cellular immune response

(2010) Michael R. Strand   Insect Science

Two Hemocyte Lineages Exist in Silkworm Larval Hematopoietic Organ

(2010) Yuichi Nakahara et al.   PLoS One

Purification and characterization of silkworm hemocytes by flow cytometry

(2008) Yuichi Nakahara et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY