Elevated Atmospheric CO2 and Nitrogen Fertilization Affect the Abundance and Community Structure of Rice Root-Associated Nitrogen-Fixing Bacteria

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria

(2020) Anton Hördt et al.   Frontiers in Microbiology

Impact of plants on the diversity and activity of methylotrophs in soil

(2020) Michael C. Macey et al.   Microbiome

CH4 oxidation-dependent 15N2 fixation in rice roots in a low-nitrogen paddy field and in Methylosinus sp. strain 3S-1 isolated from the roots

(2019) Ryo Shinoda et al.   SOIL BIOLOGY & BIOCHEMISTRY

Suppressed N fixation and diazotrophs after four decades of fertilization

(2019) Kunkun Fan et al.   Microbiome

Molecular Analyses of the Distribution and Function of Diazotrophic Rhizobia and Methanotrophs in the Tissues and Rhizosphere of Non-Leguminous Plants

(2019) Yoneyama et al.   Plants-Basel

Substrate stoichiometry determines nitrogen fixation throughout succession in southern Chinese forests

(2019) Mianhai Zheng et al.   ECOLOGY LETTERS

Continuous application of inorganic and organic fertilizers over 47 years in paddy soil alters the bacterial community structure and its influence on rice production

(2018) Upendra Kumar et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Divergent Responses of the Diazotrophic Microbiome to Elevated CO2 in Two Rice Cultivars

(2018) Yongjie Yu et al.   Frontiers in Microbiology

Elevated CO2 Increases Nitrogen Fixation at the Reproductive Phase Contributing to Various Yield Responses of Soybean Cultivars

(2017) Yansheng Li et al.   Frontiers in Plant Science

Symbiosis within Symbiosis: Evolving Nitrogen-Fixing Legume Symbionts

(2016) Philippe Remigi et al.   TRENDS IN MICROBIOLOGY

Free-air CO2enrichment (FACE) reduces the inhibitory effect of soil nitrate on N2fixation ofPisum sativum

(2015) Clayton R. Butterly et al.   ANNALS OF BOTANY

Elevated atmospheric [CO2] stimulates sugar accumulation and cellulose degradation rates of rice straw

(2015) Chunwu Zhu et al.   Global Change Biology Bioenergy

A Rice Gene for Microbial Symbiosis,Oryza sativaCCaMK, Reduces CH4Flux in a Paddy Field with Low Nitrogen Input

(2014) Zhihua Bao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metaproteomic Identification of Diazotrophic Methanotrophs and Their Localization in Root Tissues of Field-Grown Rice Plants

(2014) Zhihua Bao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrogen Fertilization Has a Stronger Effect on Soil Nitrogen-Fixing Bacterial Communities than Elevated Atmospheric CO2

(2014) Sean T. Berthrong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Are there links between responses of soil microbes and ecosystem functioning to elevated CO2, N deposition and warming? A global perspective

(2014) Pablo García-Palacios et al.   GLOBAL CHANGE BIOLOGY

Effects of Elevated Carbon Dioxide, Elevated Temperature, and Rice Growth Stage on the Community Structure of Rice Root–Associated Bacteria

(2014) Takashi Okubo et al.   MICROBES AND ENVIRONMENTS

Low Nitrogen Fertilization Adapts Rice Root Microbiome to Low Nutrient Environment by Changing Biogeochemical Functions

(2014) Seishi Ikeda et al.   MICROBES AND ENVIRONMENTS

Heat-tolerant rice cultivars retain grain appearance quality under free-air CO2 enrichment

(2014) Yasuhiro Usui et al.   Rice

Influence of elevated carbon dioxide and temperature on belowground carbon allocation and enzyme activities in tropical flooded soil planted with rice

(2013) P. Bhattacharyya et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Rhizosphere microbiome assemblage is affected by plant development

(2013) Jacqueline M Chaparro et al.   ISME Journal

Ecological Patterns of nifH Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool

(2013) Q. Wang et al.   mBio

Do nitrogen fertilizers stimulate or inhibit methane emissions from rice fields?

(2012) Kamaljit Banger et al.   GLOBAL CHANGE BIOLOGY

Influences of free-air CO2 enrichment (FACE), nitrogen fertilizer and crop residue incorporation on CH4 emissions from irrigated rice fields

(2012) Baohua Xie et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Dynamics of methanogenesis and methanotrophy in tropical paddy soils as influenced by elevated CO2 and temperature interaction

(2012) Suvendu Das et al.   SOIL BIOLOGY & BIOCHEMISTRY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Functional Ecology of Free-Living Nitrogen Fixation: A Contemporary Perspective

(2011) Sasha C. Reed et al.   Annual Review of Ecology Evolution and Systematics

Methane and soil CO2 production from current-season photosynthates in a rice paddy exposed to elevated CO2 concentration and soil temperature

(2011) Takeshi Tokida et al.   GLOBAL CHANGE BIOLOGY

Nitrogen Cycling in Rice Paddy Environments: Past Achievements and Future Challenges

(2011) Satoshi Ishii et al.   MICROBES AND ENVIRONMENTS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Effect of nitrogen fertilization on methane oxidation, abundance, community structure and gene expression of methanotrophs in the rice rhizosphere

(2010) Minita Shrestha et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

How far do experimentally elevated CO2levels reach into the surrounding? - An example using the13C label of soil organic matter as an archive

(2009) ALEXANDER HEIM et al.   GLOBAL CHANGE BIOLOGY

Horizontal transfer of the nitrogen fixation gene cluster in the cyanobacterium Microcoleus chthonoplastes

(2009) Henk Bolhuis et al.   ISME Journal

Will Elevated Carbon Dioxide Concentration Amplify the Benefits of Nitrogen Fixation in Legumes?

(2009) A. Rogers et al.   PLANT PHYSIOLOGY

Reducing environmental risk by improving N management in intensive Chinese agricultural systems

(2009) X.-T. Ju et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variation in the active diazotrophic community in rice paddy—nifH PCR-DGGE analysis of rhizosphere and bulk soil

(2008) Ingvild Wartiainen et al.   APPLIED SOIL ECOLOGY

Evidence for the functional significance of diazotroph community structure in soil

(2008) Shi-Fang Hsu et al.   ISME Journal

Genotypic variation in rice yield enhancement by elevated CO2 relates to growth before heading, and not to maturity group

(2008) H. Shimono et al.   JOURNAL OF EXPERIMENTAL BOTANY

15N2–DNA–stable isotope probing of diazotrophic methanotrophs in soil

(2007) Daniel H. Buckley et al.   SOIL BIOLOGY & BIOCHEMISTRY