Nitrogen Cycling in Rice Paddy Environments: Past Achievements and Future Challenges

Environmental and Taxonomic Bacterial Diversity of Anaerobic Uranium(IV) Bio-Oxidation

(2011) Karrie A. Weber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temporal dynamics of ammonia oxidizer (amoA) and denitrifier (nirK) communities in the rhizosphere of a rice ecosystem from Tai Lake region, China

(2011) Qaiser Hussain et al.   APPLIED SOIL ECOLOGY

Characterization and production and consumption processes of N2O emitted from temperate agricultural soils determined via isotopomer ratio analysis

(2011) Sakae Toyoda et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Identification and isolation of active N2O reducers in rice paddy soil

(2011) Satoshi Ishii et al.   ISME Journal

Formation of hybrid N2O in a suspended soil due to co-denitrification of NH2OH

(2011) Oliver Spott et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Visualization and Direct Counting of Individual Denitrifying Bacterial Cells in Soil by nirK-Targeted Direct in situ PCR

(2011) Noriko Ryuda et al.   MICROBES AND ENVIRONMENTS

Quantitative Analyses of Ammonia-oxidizing Archaea (AOA) and Ammonia-oxidizing Bacteria (AOB) in Fields with Different Soil Types

(2011) Sho Morimoto et al.   MICROBES AND ENVIRONMENTS

Distribution and Diversity of Anaerobic Ammonium Oxidation (Anammox) Bacteria in the Sediment of a Eutrophic Freshwater Lake, Lake Kitaura, Japan

(2011) Ikuo Yoshinaga et al.   MICROBES AND ENVIRONMENTS

Isotopic Signature of N2O Produced by Marine Ammonia-Oxidizing Archaea

(2011) A. E. Santoro et al.   SCIENCE

Microbiology of nitrogen cycle in animal manure compost

(2011) Koki Maeda et al.   Microbial Biotechnology

Source of Nitrous Oxide Emissions during the Cow Manure Composting Process as Revealed by Isotopomer Analysis of and amoA Abundance in Betaproteobacterial Ammonia-Oxidizing Bacteria

(2010) K. Maeda et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation of Oligotrophic Denitrifiers Carrying Previously Uncharacterized Functional Gene Sequences

(2010) Satoshi Ishii et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The role of clay minerals in the reduction of nitrate in groundwater by zero-valent iron

(2010) Dong-Wan Cho et al.   CHEMOSPHERE

Nitrifier denitrification can be a source of N2O from soil: a revised approach to the dual-isotope labelling method

(2010) D. M. Kool et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Seasonal Change in Vertical Distribution of Ammonia-Oxidizing Archaea and Bacteria and Their Nitrification in Temperate Forest Soil

(2010) Yuki Onodera et al.   MICROBES AND ENVIRONMENTS

Characteristics of the Microbial Community Associated with Ammonia Oxidation in a Full-Scale Rockwool Biofilter Treating Malodors from Livestock Manure Composting

(2010) Tomoko Yasuda et al.   MICROBES AND ENVIRONMENTS

Seasonal Change in Methanotrophic Diversity and Populations in a Rice Field Soil Assessed by DNA-Stable Isotope Probing and Quantitative Real-Time PCR

(2010) Daisuke Mayumi et al.   MICROBES AND ENVIRONMENTS

Microbial Population Dynamics and Community Structure during the Formation of Nitrifying Granules to Treat Ammonia-Rich Inorganic Wastewater

(2010) Shinya Matsumoto et al.   MICROBES AND ENVIRONMENTS

nirK-Harboring Denitrifiers Are More Responsive to Denitrification- Inducing Conditions in Rice Paddy Soil Than nirS-Harboring Bacteria

(2010) Megumi Yoshida et al.   MICROBES AND ENVIRONMENTS

A Great Leap forward in Microbial Ecology

(2010) Satoshi Okabe et al.   MICROBES AND ENVIRONMENTS

Azospirillum sp. Strain B510 Enhances Rice Growth and Yield

(2010) Tsuyoshi Isawa et al.   MICROBES AND ENVIRONMENTS

Enrichment of a Novel Marine Ammonia-Oxidizing Archaeon Obtained from Sand of an Eelgrass Zone

(2010) Naoki Matsutani et al.   MICROBES AND ENVIRONMENTS

Contribution of Anammox Bacteria to Benthic Nitrogen Cycling in a Mangrove Forest and Shrimp Ponds, Haiphong, Vietnam

(2010) Teruki Amano et al.   MICROBES AND ENVIRONMENTS

Enrichment Using an Up-flow Column Reactor and Community Structure of Marine Anammox Bacteria from Coastal Sediment

(2010) Tomonori Kindaichi et al.   MICROBES AND ENVIRONMENTS

Phylogenetic and Functional Diversity of Denitrifying Bacteria Isolated from Various Rice Paddy and Rice-Soybean Rotation Fields

(2010) Kanako Tago et al.   MICROBES AND ENVIRONMENTS

Seasonal Dynamics of Anammox Bacteria in Estuarial Sediment of the Mai Po Nature Reserve Revealed by Analyzing the 16S rRNA and Hydrazine Oxidoreductase (hzo) Genes

(2010) Meng Li et al.   MICROBES AND ENVIRONMENTS

Impact of Long-Term Fertilization on the Composition of Denitrifier Communities Based on Nitrite Reductase Analyses in a Paddy Soil

(2010) Zhe Chen et al.   MICROBIAL ECOLOGY

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbon and oxygen controls on N2O and N2 production during nitrate reduction

(2010) N. Morley et al.   SOIL BIOLOGY & BIOCHEMISTRY

Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification

(2010) Masahito Hayatsu et al.   SOIL SCIENCE AND PLANT NUTRITION

Microbial populations in various paddy soils respond differently to denitrification-inducing conditions, albeit background bacterial populations are similar

(2010) Satoshi Ishii et al.   SOIL SCIENCE AND PLANT NUTRITION

Microbial Populations Responsive to Denitrification-Inducing Conditions in Rice Paddy Soil, as Revealed by Comparative 16S rRNA Gene Analysis

(2009) S. Ishii et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Eukaryotic nirK Genes Encoding Copper-Containing Nitrite Reductase: Originating from the Protomitochondrion?

(2009) S.-W. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum

(2009) K. F. Ettwig et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteriarather thanArchaeadominate microbial ammonia oxidation in an agricultural soil

(2009) Zhongjun Jia et al.   ENVIRONMENTAL MICROBIOLOGY

Archaeal ammonia oxidizers and nirS-type denitrifiers dominate sediment nitrifying and denitrifying populations in a subtropical macrotidal estuary

(2009) Guy C J Abell et al.   ISME Journal

Seasonal Changes in Abundance of Ammonia-Oxidizing Archaea and Ammonia-Oxidizing Bacteria and Their Nitrification in Sand of an Eelgrass Zone

(2009) Yoshifumi Ando et al.   MICROBES AND ENVIRONMENTS

Analysis of Ammonia Monooxygenase and Archaeal 16S rRNA Gene Fragments in Nitrifying Acid-Sulfate Soil Microcosms

(2009) Asami Nakaya et al.   MICROBES AND ENVIRONMENTS

In Situ Detection and Quantification of Uncultured Members of the Phylum Nitrospirae Abundant in Methanogenic Wastewater Treatment Systems

(2009) Akinori Iguchi et al.   MICROBES AND ENVIRONMENTS

Rice Seeds as Sources of Endophytic Bacteria

(2009) Hiroko Kaga et al.   MICROBES AND ENVIRONMENTS

Nitrous Oxide Emission and Microbial Community in the Rhizosphere of Nodulated Soybeans during the Late Growth Period

(2009) Shoko Inaba et al.   MICROBES AND ENVIRONMENTS

Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil

(2009) Megumi Yoshida et al.   SOIL BIOLOGY & BIOCHEMISTRY

Automated sampling system for long-term monitoring of nitrous oxide and methane fluxes from soils

(2009) Hiroko Akiyama et al.   SOIL SCIENCE AND PLANT NUTRITION

Denitrifying bacteria anaerobically oxidize methane in the absence ofArchaea

(2008) Katharina F. Ettwig et al.   ENVIRONMENTAL MICROBIOLOGY

Endophytic Bacteria in the Rice Plant

(2008) Hironobu Mano et al.   MICROBES AND ENVIRONMENTS

Identification of Novel Betaproteobacteria in a Succinate-Assimilating Population in Denitrifying Rice Paddy Soil by Using Stable Isotope Probing

(2008) Takayuki Saito et al.   MICROBES AND ENVIRONMENTS

Isotopologue fractionation during N2O production by fungal denitrification

(2008) Robin L. Sutka et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY