A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.)

Significantly improving the quality of genome assemblies through curation

(2021) Kerstin Howe et al.   GigaScience

Identifying and removing haplotypic duplication in primary genome assemblies

(2020) Dengfeng Guan et al.   BIOINFORMATICS

BlobToolKit - Interactive Quality Assessment of Genome Assemblies

(2020) Richard Challis et al.   G3-Genes Genomes Genetics

Chromosomal-level assembly of Juglans sigillata genome using Nanopore, BioNano, and Hi-C analysis

(2020) De-Lu Ning et al.   GigaScience

The puzzling mitochondrial phylogeography of the black soldier fly (Hermetia illucens), the commercially most important insect protein species

(2020) Gunilla Ståhls et al.   BMC EVOLUTIONARY BIOLOGY

Building near-complete plant genomes

(2020) Todd P Michael et al.   CURRENT OPINION IN PLANT BIOLOGY

Genetic and phenotypic consequences of early domestication in black soldier flies ( Hermetia illucens )

(2020) C. Rhode et al.   ANIMAL GENETICS

An improved pig reference genome sequence to enable pig genetics and genomics research

(2020) Amanda Warr et al.   GigaScience

Black soldier fly larvae feed by forming a fountain around food

(2019) Olga Shishkov et al.   Journal of the Royal Society Interface

Proteomics and Lipidomics of Black Soldier Fly (Diptera: Stratiomyidae) and Blow Fly (Diptera: Calliphoridae) Larvae

(2019) Vahideh Rabani et al.   JOURNAL OF INSECT SCIENCE

A high-quality genome assembly for the endangered golden snub-nosed monkey (Rhinopithecus roxellana)

(2019) Lu Wang et al.   GigaScience

Genomic landscape and genetic manipulation of the black soldier fly Hermetia illucens, a natural waste recycler

(2019) Shuai Zhan et al.   CELL RESEARCH

Physicochemical Structure Analysis of Chitin Extracted from Pupa Exuviae and Dead Imago of Wild Black Soldier Fly (Hermetia illucens)

(2019) Debasree Purkayastha et al.   JOURNAL OF POLYMERS AND THE ENVIRONMENT

Chromosomal-level reference genome of Chinese peacock butterfly (Papilio bianor) based on third-generation DNA sequencing and Hi-C analysis

(2019) Sihan Lu et al.   GigaScience

Nutritional immunology: Diversification and diet-dependent expression of antimicrobial peptides in the black soldier fly Hermetia illucens

(2018) Heiko Vogel et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Runs of homozygosity: windows into population history and trait architecture

(2018) Francisco C. Ceballos et al.   NATURE REVIEWS GENETICS

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs

(2018) Evgenia V Kriventseva et al.   NUCLEIC ACIDS RESEARCH

FlyBase 2.0: the next generation

(2018) Jim Thurmond et al.   NUCLEIC ACIDS RESEARCH

Using Hermetia illucens to process Ugandan waragi waste

(2018) Darja Dobermann et al.   JOURNAL OF CLEANER PRODUCTION

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Purification and characterization of a novel antibacterial peptide from black soldier fly (Hermetia illucens) larvae

(2015) Soon-Ik Park et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

The Dfam database of repetitive DNA families

(2015) Robert Hubley et al.   NUCLEIC ACIDS RESEARCH

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Feed Conversion, Survival and Development, and Composition of Four Insect Species on Diets Composed of Food By-Products

(2015) Dennis G. A. B. Oonincx et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Structure and Function of Cytochrome P450S in Insect Adaptation to Natural and Synthetic Toxins: Insights Gained from Molecular Modeling

(2013) Mary A. Schuler et al.   JOURNAL OF CHEMICAL ECOLOGY

Reversal of an ancient sex chromosome to an autosome in Drosophila

(2013) Beatriz Vicoso et al.   NATURE

When a turbot catches a fly: Evaluation of a pre-pupae meal of the Black Soldier Fly (Hermetia illucens) as fish meal substitute — Growth performance and chitin degradation in juvenile turbot (Psetta maxima)

(2012) S. Kroeckel et al.   AQUACULTURE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

BamTools: a C++ API and toolkit for analyzing and managing BAM files

(2011) D. W. Barnett et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

From organic waste to biodiesel: Black soldier fly, Hermetia illucens, makes it feasible

(2010) Qing Li et al.   FUEL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

(2008) Mario Stanke et al.   BIOINFORMATICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH