Genomic divergence in sympatry indicates strong reproductive barriers and cryptic species within Eucalyptus salubris

Pervasive admixture between eucalypt species has consequences for conservation and assisted migration

(2019) Brenton von Takach Dukai et al.   Evolutionary Applications

More grist for the mill? Species delimitation in the genomic era and its implications for conservation

(2019) David W. G. Stanton et al.   CONSERVATION GENETICS

Standing genomic variation within coding and regulatory regions contributes to the adaptive capacity to climate in a foundation tree species

(2019) Collin W. Ahrens et al.   MOLECULAR ECOLOGY

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

Landscape drivers of genomic diversity and divergence in woodland Eucalyptus

(2019) Kevin D Murray et al.   MOLECULAR ECOLOGY

Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species

(2018) Susan Rutherford et al.   HEREDITY

Cryptic species as a window into the paradigm shift of the species concept

(2018) Cene Fišer et al.   MOLECULAR ECOLOGY

dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

(2018) Bernd Gruber et al.   Molecular Ecology Resources

Chloroplast variation is incongruent with classification of the Australian bloodwood eucalypts (genus Corymbia, family Myrtaceae)

(2018) Tanja M. Schuster et al.   PLoS One

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Finding Evolutionary Processes Hidden in Cryptic Species

(2018) Torsten H. Struck et al.   TRENDS IN ECOLOGY & EVOLUTION

Evidence of inter-sectional chloroplast capture in Corymbia among sections Torellianae and Maculatae

(2018) Adam Healey et al.   AUSTRALIAN JOURNAL OF BOTANY

Delineating species in the speciation continuum: a proposal

(2018) Nicolas Galtier   Evolutionary Applications

Multispecies coalescent delimits structure, not species

(2017) Jeet Sukumaran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Cryptic species diversity reveals biogeographic support for the ‘mountain passes are higher in the tropics’ hypothesis

(2016) B. A. Gill et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates

(2015) M. Gautier   GENETICS

Phylogeographic pattern of range expansion provides evidence for cryptic species lineages in Silene nutans in Western Europe

(2015) H Martin et al.   HEREDITY

Patterns of Reproductive Isolation inEucalyptus—A Phylogenetic Perspective

(2015) Matthew J. Larcombe et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unexpected cryptic species diversity in the widespread coralSeriatopora hystrixmasks spatial-genetic patterns of connectivity

(2015) Patricia A. Warner et al.   MOLECULAR ECOLOGY

Genome-wide scans reveal cryptic population structure in a dry-adapted eucalypt

(2015) Dorothy A. Steane et al.   Tree Genetics & Genomes

Separation in flowering time contributes to the maintenance of sympatric cryptic plant lineages

(2015) Stefan G. Michalski et al.   Ecology and Evolution

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Phylogeographic evidence for two mesic refugia in a biodiversity hotspot

(2014) H Nistelberger et al.   HEREDITY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Species Delimitation using Genome-Wide SNP Data

(2014) Adam D. Leaché et al.   SYSTEMATIC BIOLOGY

Shared phylogeographic patterns and widespread chloroplast haplotype sharing in Eucalyptus species with different ecological tolerances

(2014) Paul G. Nevill et al.   Tree Genetics & Genomes

Phosphorus limits Eucalyptus grandis seedling growth in an unburnt rain forest soil

(2014) David Y. P. Tng et al.   Frontiers in Plant Science

Estimating the time since fire of long-unburnt Eucalyptus salubris (Myrtaceae) stands in the Great Western Woodlands

(2013) Carl R. Gosper et al.   AUSTRALIAN JOURNAL OF BOTANY

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Carex viridistellata sp. nov. (Cyperaceae), a New Cryptic Species from Prairie Fens of the Eastern United States

(2013) Nathan J. Derieg et al.   SYSTEMATIC BOTANY

Edaphic adaptation maintains the coexistence of two cryptic species on serpentine soils

(2012) Jenn M. Yost et al.   AMERICAN JOURNAL OF BOTANY

Testing the variability of chloroplast sequences for plant phylogeography

(2012) M. Byrne et al.   AUSTRALIAN JOURNAL OF BOTANY

Implications of different species concepts for conserving biodiversity

(2012) Richard Frankham et al.   BIOLOGICAL CONSERVATION

Chloroplast DNA diversity associated with protected slopes and valleys for hybridizingEucalyptusspecies on isolated ranges in south-eastern Australia

(2012) Laura J. Pollock et al.   JOURNAL OF BIOGEOGRAPHY

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

The trouble with isolation by distance

(2012) PATRICK G. MEIRMANS   MOLECULAR ECOLOGY

Progress in Myrtaceae genetics and genomics: Eucalyptus as the pivotal genus

(2012) Dario Grattapaglia et al.   Tree Genetics & Genomes

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

An integrative approach to delimiting species in a rare but widespread mycoheterotrophic orchid

(2011) CRAIG F. BARRETT et al.   MOLECULAR ECOLOGY

Species differentiation and gene flow in the Blackbutts (genus Eucalyptus subgenus Eucalyptus section Pseudophloius)

(2010) Mervyn Shepherd et al.   CONSERVATION GENETICS

Above- and belowground interactions drive habitat segregation between two cryptic species of tropical trees

(2010) Camila Pizano et al.   ECOLOGY

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus

(2010) Carolina P Sansaloni et al.   Plant Methods

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Genetic markers in the playground of multivariate analysis

(2009) T Jombart et al.   HEREDITY

Spatial Inference of Admixture Proportions and Secondary Contact Zones

(2009) E. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

The strength and genetic basis of reproductive isolating barriers in flowering plants

(2008) D. B Lowry et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES