Active DNRA and denitrification in oxic hypereutrophic waters

Seasonal cycle of benthic denitrification and DNRA in the aphotic coastal zone, northern Baltic Sea

(2020) D Hellemann et al.   MARINE ECOLOGY PROGRESS SERIES

Depicting Temporal, Functional, and Phylogenetic Patterns in Estuarine Diazotrophic Communities from Environmental DNA and RNA

(2020) Mindaugas Zilius et al.   MICROBIAL ECOLOGY

Occurrence of human pathogenic bacteria carrying antibiotic resistance genes revealed by metagenomic approach: A case study from an aquatic environment

(2019) Renjun Zhou et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Untangling hidden nutrient dynamics: rapid ammonium cycling and single-cell ammonium assimilation in marine plankton communities

(2019) Isabell Klawonn et al.   ISME Journal

The Effect of Chironomid Larvae on Nitrogen Cycling and Microbial Communities in Soft Sediments

(2019) Aurelija Samuiloviene et al.   Water

Distinctive tasks of different cyanobacteria and associated bacteria in carbon as well as nitrogen fixation and cycling in a late stage Baltic Sea bloom

(2019) Falk Eigemann et al.   PLoS One

Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons

(2018) Marcel Smid et al.   BMC BIOINFORMATICS

River plume and bottom boundary layer – Hotspots for nitrification in a coastal bay?

(2018) Ines Bartl et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Declining oxygen in the global ocean and coastal waters

(2018) Denise Breitburg et al.   SCIENCE

The influence of cyanobacteria blooms on the attenuation of nitrogen throughputs in a Baltic coastal lagoon

(2018) M. Zilius et al.   BIOGEOCHEMISTRY

Coupled Nitrification-Denitrification Caused by Suspended Sediment (SPS) in Rivers: Importance of SPS Size and Composition

(2016) Xinghui Xia et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

An overview of diversity, occurrence, genetics and toxin production of bloom-forming Dolichospermum ( Anabaena ) species

(2016) Xiaochuang Li et al.   HARMFUL ALGAE

Denitrification and DNRA at the Baltic Sea oxic-anoxic interface: Substrate spectrum and kinetics

(2016) Stefano Bonaglia et al.   LIMNOLOGY AND OCEANOGRAPHY

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

Hypoxia and nitrogen processing in the Baltic Sea water column

(2016) Susanna Hietanen et al.   LIMNOLOGY AND OCEANOGRAPHY

Oxygenation of an anoxic fjord basin strongly stimulates benthic denitrification and DNRA

(2015) Loreto De Brabandere et al.   BIOGEOCHEMISTRY

N2-fixation, ammonium release and N-transfer to the microbial and classical food web within a plankton community

(2015) Birgit Adam et al.   ISME Journal

Enrichment of DNRA bacteria in a continuous culture

(2015) Eveline M van den Berg et al.   ISME Journal

Aerobic and anaerobic nitrogen transformation processes in N2-fixing cyanobacterial aggregates

(2015) Isabell Klawonn et al.   ISME Journal

Nitrate reduction pathway in an anaerobic acidification reactor and its effect on acid fermentation

(2015) Li Xie et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Seasonal oxygen, nitrogen and phosphorus benthic cycling along an impacted Baltic Sea estuary: regulation and spatial patterns

(2014) S. Bonaglia et al.   BIOGEOCHEMISTRY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Production and consumption of nitrous oxide in nitrate-ammonifying Wolinella succinogenes cells

(2014) M. Luckmann et al.   MICROBIOLOGY-SGM

The environmental controls that govern the end product of bacterial nitrate respiration

(2014) B. Kraft et al.   SCIENCE

Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota

(2014) Dmitry A. Ravcheev et al.   Frontiers in Microbiology

Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data

(2013) C. E. Robertson et al.   BIOINFORMATICS

Feedback Mechanisms Between Cyanobacterial Blooms, Transient Hypoxia, and Benthic Phosphorus Regeneration in Shallow Coastal Environments

(2013) Mindaugas Zilius et al.   Estuaries and Coasts

Denitrification in the water column of the central Baltic Sea

(2013) Tage Dalsgaard et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Harmful Cyanobacterial Blooms: Causes, Consequences, and Controls

(2013) Hans W. Paerl et al.   MICROBIAL ECOLOGY

Assessing the Fecal Microbiota: An Optimized Ion Torrent 16S rRNA Gene-Based Analysis Protocol

(2013) Christian Milani et al.   PLoS One

Pseudomonas aeruginosa and Achromobacter sp.: nitrifying aerobic denitrifiers have a plasmid encoding for denitrifying functional genes

(2013) V. Kathiravan et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Rates of dinitrogen fixation and the abundance of diazotrophs in North American coastal waters between Cape Hatteras and Georges Bank

(2012) M. R. Mulholland et al.   LIMNOLOGY AND OCEANOGRAPHY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Methodological Underestimation of Oceanic Nitrogen Fixation Rates

(2010) Wiebke Mohr et al.   PLoS One

The Evolution and Future of Earth’s Nitrogen Cycle

(2010) Donald E. Canfield et al.   SCIENCE

Controlling harmful cyanobacterial blooms in a hyper-eutrophic lake (Lake Taihu, China): The need for a dual nutrient (N & P) management strategy

(2010) Hans W. Paerl et al.   WATER RESEARCH

Survey of toxic algal (microcystin) distribution in Florida lakes

(2009) D. L. Bigham et al.   LAKE AND RESERVOIR MANAGEMENT