Polyploidy underlies co-option and diversification of biosynthetic triterpene pathways in the apple tribe
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Title
Polyploidy underlies co-option and diversification of biosynthetic triterpene pathways in the apple tribe
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 118, Issue 20, Pages e2101767118
Publisher
Proceedings of the National Academy of Sciences
Online
2021-05-14
DOI
10.1073/pnas.2101767118
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- (2019) Zhenhua Liu et al. NEW PHYTOLOGIST
- The Rosa genome provides new insights into the domestication of modern roses
- (2018) Olivier Raymond et al. NATURE GENETICS
- HMMER web server: 2018 update
- (2018) Simon C Potter et al. NUCLEIC ACIDS RESEARCH
- Whole-Genome Duplication and Plant Macroevolution
- (2018) James W. Clark et al. TRENDS IN PLANT SCIENCE
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- (2018) Sandeep et al. NEW PHYTOLOGIST
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
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- The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis
- (2017) Karel Miettinen et al. Nature Communications
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- (2016) Christelle M. Andre et al. NEW PHYTOLOGIST
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- (2016) Neva C. Durand et al. Cell Systems
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
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- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
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- (2014) Suhas S.P. Rao et al. CELL
- Rfam 12.0: updates to the RNA families database
- (2014) Eric P. Nawrocki et al. NUCLEIC ACIDS RESEARCH
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
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- (2014) Shengyi Liu et al. Nature Communications
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- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
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- (2013) Jing-Ke Weng NEW PHYTOLOGIST
- The genome of the pear (Pyrus bretschneideri Rehd.)
- (2012) J. Wu et al. GENOME RESEARCH
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- CYP701A8: A Rice ent-Kaurene Oxidase Paralog Diverted to More Specialized Diterpenoid Metabolism
- (2012) Q. Wang et al. PLANT PHYSIOLOGY
- The Rise of Chemodiversity in Plants
- (2012) J.-K. Weng et al. SCIENCE
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- (2012) Qixiang Zhang et al. Nature Communications
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- (2011) Carson Holt et al. BMC BIOINFORMATICS
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- (2011) Bo Li et al. BMC BIOINFORMATICS
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