Primate innate immune responses to bacterial and viral pathogens reveals an evolutionary trade-off between strength and specificity

Toll-like Receptors and the Control of Immunity

(2020) Katherine A. Fitzgerald et al.   CELL

Natural selection contributed to immunological differences between hunter-gatherers and agriculturalists

(2019) Genelle F. Harrison et al.   Nature Ecology & Evolution

Retroviruses drive the rapid evolution of mammalianAPOBEC3genes

(2019) Jumpei Ito et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic evolution of regulatory element ensembles in primate CD4+ T cells

(2018) Charles G. Danko et al.   Nature Ecology & Evolution

Gene expression variability across cells and species shapes innate immunity

(2018) Tzachi Hagai et al.   NATURE

An overview of nonhuman primates in aging research

(2017) Julie A. Mattison et al.   EXPERIMENTAL GERONTOLOGY

Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts

(2017) Robin van der Lee et al.   NUCLEIC ACIDS RESEARCH

Interferon-γ is a master checkpoint regulator of cytokine-induced differentiation

(2017) Zhao Zha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seroprevalence of Zika Virus in Wild African Green Monkeys and Baboons

(2017) Connor R. Buechler et al.   mSphere

Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes

(2016) Matthieu Deschamps et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Innate cell communication kick-starts pathogen-specific immunity

(2016) Amariliz Rivera et al.   NATURE IMMUNOLOGY

Viruses are a dominant driver of protein adaptation in mammals

(2016) David Enard et al.   eLife

Innate Immune Pattern Recognition: A Cell Biological Perspective

(2015) Sky W. Brubaker et al.   Annual Review of Immunology

CD13 Restricts TLR4 Endocytic Signal Transduction in Inflammation

(2015) Mallika Ghosh et al.   JOURNAL OF IMMUNOLOGY

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Innate Immune Programing by Endotoxin and Its Pathological Consequences

(2015) Matthew C. Morris et al.   Frontiers in Immunology

The Molecular Signatures Database Hallmark Gene Set Collection

(2015) Arthur Liberzon et al.   Cell Systems

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons

(2014) Ying Zhu et al.   BMC GENOMICS

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

A Comparative Review of Toll-Like Receptor 4 Expression and Functionality in Different Animal Species

(2014) Céline Vaure et al.   Frontiers in Immunology

Lipopolysaccharide induces IFN-γ production in human NK cells

(2013) Leonid M. Kanevskiy et al.   Frontiers in Immunology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Evolution of Inflammatory Diseases

(2012) Daniel Okin et al.   CURRENT BIOLOGY

Living fast and dying of infection: host life history drives interspecific variation in infection and disease risk

(2012) Pieter T. J. Johnson et al.   ECOLOGY LETTERS

Innate immune responses to TLR2 and TLR4 agonists differ between baboons, chimpanzees and humans

(2012) J.F. Brinkworth et al.   JOURNAL OF MEDICAL PRIMATOLOGY

Natural SIV Hosts: Showing AIDS the Door

(2012) Ann Chahroudi et al.   SCIENCE

Barriers of hepatitis C virus interspecies transmission

(2012) Lisa Sandmann et al.   VIROLOGY

Fever from the forest: prospects for the continued emergence of sylvatic dengue virus and its impact on public health

(2011) Nikos Vasilakis et al.   NATURE REVIEWS MICROBIOLOGY

Host physiological phenotype explains pathogen reservoir potential

(2010) James Patrick Cronin et al.   ECOLOGY LETTERS

Adaptation and Constraint at Toll-Like Receptors in Primates

(2010) G. Wlasiuk et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional Comparison of Innate Immune Signaling Pathways in Primates

(2010) Luis B. Barreiro et al.   PLoS Genetics

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

Pathogen recognition by innate immunity and its signaling

(2009) Shizuo AKIRA   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

TRAM couples endocytosis of Toll-like receptor 4 to the induction of interferon-β

(2008) Jonathan C Kagan et al.   NATURE IMMUNOLOGY

Divergent TLR7 and TLR9 signaling and type I interferon production distinguish pathogenic and nonpathogenic AIDS virus infections

(2008) Judith N Mandl et al.   NATURE MEDICINE