Chorus2: design of genome‐scale oligonucleotide‐based probes for fluorescence in situ hybridization

Limitation of current probe design for oligo-cross-FISH, exemplified by chromosome evolution studies in duckweeds

(2021) Phuong T. N. Hoang et al.   CHROMOSOMA

The Formation of Sex Chromosomes in Silene latifolia and S. dioica Was Accompanied by Multiple Chromosomal Rearrangements

(2020) Václav Bačovský et al.   Frontiers in Plant Science

A universal chromosome identification system for maize and wild Zea species

(2020) Guilherme T. Braz et al.   CHROMOSOME RESEARCH

The UCSC Genome Browser database: 2021 update

(2020) Jairo Navarro Gonzalez et al.   NUCLEIC ACIDS RESEARCH

Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships

(2019) Patrice S. Albert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fluorescence in situ hybridization in plants: recent developments and future applications

(2019) Jiming Jiang   CHROMOSOME RESEARCH

An extraordinarily stable karyotype of the woody Populus species revealed by chromosome painting

(2019) Haoyang Xin et al.   PLANT JOURNAL

Dual‐color oligo‐FISH can reveal chromosomal variations and evolution in Oryza species

(2019) Xiaoyu Liu et al.   PLANT JOURNAL

Transposable elements contribute to dynamic genome content in maize

(2019) Sarah N. Anderson et al.   PLANT JOURNAL

Update soybean Zhonghuang 13 genome to a golden reference

(2019) Yanting Shen et al.   Science China-Life Sciences

Meiotic crossovers characterized by haplotype-specific chromosome painting in maize

(2019) Lívia do Vale Martins et al.   Nature Communications

Flexible chromosome painting based on multiplex PCR of oligonucleotides and its application for comparative chromosome analyses in Cucumis

(2019) Yunfei Bi et al.   PLANT JOURNAL

OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes

(2018) Brian J. Beliveau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution

(2017) Guilherme T. Braz et al.   GENETICS

Improved maize reference genome with single-molecule technologies

(2017) Yinping Jiao et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Genome diversity of tuber-bearingSolanumuncovers complex evolutionary history and targets of domestication in the cultivated potato

(2017) Michael A. Hardigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution

(2017) Guilherme T. Braz et al.   GENETICS

Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum

(2016) Michael A. Hardigan et al.   PLANT CELL

Chromosome-Specific Painting in Cucumis Species Using Bulked Oligonucleotides

(2015) Yonghua Han et al.   GENETICS

An integrated map of structural variation in 2,504 human genomes

(2015) Peter H. Sudmant et al.   NATURE

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Chromosome-Specific Painting in Cucumis Species Using Bulked Oligonucleotides

(2015) Yonghua Han et al.   GENETICS

Oligonucleotides replacing the roles of repetitive sequences pAs1, pSc119.2, pTa-535, pTa71, CCS1, and pAWRC.1 for FISH analysis

(2014) Zongxiang Tang et al.   JOURNAL OF APPLIED GENETICS

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

(2012) Z. Gong et al.   PLANT CELL

Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes

(2012) B. J. Beliveau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Random BAC FISH of monocot plants reveals differential distribution of repetitive DNA elements in small and large chromosome species

(2011) Go Suzuki et al.   PLANT CELL REPORTS

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE