Scale dependency of joint species distribution models challenges interpretation of biotic interactions

Co‐occurrence is not evidence of ecological interactions

(2020) F. Guillaume Blanchet et al.   ECOLOGY LETTERS

Scale‐dependence of ecological assembly rules: insights from empirical datasets and joint species distribution modelling

(2020) Heidi K. Mod et al.   JOURNAL OF ECOLOGY

A standard protocol for reporting species distribution models

(2020) Damaris Zurell et al.   ECOGRAPHY

Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA

(2019) Krista M. Ruppert et al.   Global Ecology and Conservation

A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels

(2019) Anna Norberg et al.   ECOLOGICAL MONOGRAPHS

Joint species distribution models with species correlations and imperfect detection

(2019) Mathias W. Tobler et al.   ECOLOGY

Autonomous sound recording outperforms human observation for sampling birds: a systematic map and user guide

(2019) Kevin Darras et al.   ECOLOGICAL APPLICATIONS

Testing species assemblage predictions from stacked and joint species distribution models

(2019) Damaris Zurell et al.   JOURNAL OF BIOGEOGRAPHY

Machine learning algorithms to infer trait‐matching and predict species interactions in ecological networks

(2019) Maximilian Pichler et al.   Methods in Ecology and Evolution

Computationally efficient joint species distribution modeling of big spatial data

(2019) Gleb Tikhonov et al.   ECOLOGY

Joint species distribution modelling with the r ‐package H msc

(2019) Gleb Tikhonov et al.   Methods in Ecology and Evolution

Do joint species distribution models reliably detect interspecific interactions from co-occurrence data in homogenous environments?

(2018) Damaris Zurell et al.   ECOGRAPHY

Fundamental contradictions among observational and experimental estimates of non-trophic species interactions

(2018) Allison K. Barner et al.   ECOLOGY

Species co-occurrence networks: Can they reveal trophic and non-trophic interactions in ecological communities?

(2018) Mara A. Freilich et al.   ECOLOGY

Asymmetric biotic interactions and abiotic niche differences revealed by a dynamic joint species distribution model

(2018) Nina K. Lany et al.   ECOLOGY

Life-history characteristics of European birds

(2018) Lenka Storchová et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Does functional homogenization accompany taxonomic homogenization of British birds and how do biotic factors and climate affect these processes?

(2018) Hannah J. White et al.   Ecology and Evolution

Biotic interactions in species distribution modelling: 10 questions to guide interpretation and avoid false conclusions

(2018) Carsten F. Dormann et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

A comparison of joint species distribution models for presence-absence data

(2018) David P. Wilkinson et al.   Methods in Ecology and Evolution

Identifying animal species in camera trap images using deep learning and citizen science

(2018) Marco Willi et al.   Methods in Ecology and Evolution

Joint species distribution modelling for spatio-temporal occurrence and ordinal abundance data

(2017) Erin M. Schliep et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Ecological Network Inference From Long-Term Presence-Absence Data

(2017) Elizabeth L. Sander et al.   Scientific Reports

boral - Bayesian Ordination and Regression Analysis of Multivariate Abundance Data in r

(2016) Francis K.C. Hui   Methods in Ecology and Evolution

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Spatial factor analysis: a new tool for estimating joint species distributions and correlations in species range

(2015) James T. Thorson et al.   Methods in Ecology and Evolution

Uncovering hidden spatial structure in species communities with spatially explicit joint species distribution models

(2015) Otso Ovaskainen et al.   Methods in Ecology and Evolution

Wall-to-Wall Forest Mapping Based on Digital Surface Models from Image-Based Point Clouds and a NFI Forest Definition

(2015) Lars Waser et al.   Forests

The geographic scaling of biotic interactions

(2014) Miguel B. Araújo et al.   ECOGRAPHY

Spatial scale resolves the niche versus neutral theory debate

(2014) Jonathan M. Chase   JOURNAL OF VEGETATION SCIENCE

Understanding co-occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM)

(2014) Laura J. Pollock et al.   Methods in Ecology and Evolution

More than the sum of the parts: forest climate response from joint species distribution models

(2013) James S. Clark et al.   ECOLOGICAL APPLICATIONS

Rethinking Community Assembly through the Lens of Coexistence Theory

(2012) J. HilleRisLambers et al.   Annual Review of Ecology Evolution and Systematics

The role of biotic interactions in shaping distributions and realised assemblages of species: implications for species distribution modelling

(2012) Mary Susanne Wisz et al.   BIOLOGICAL REVIEWS

Collinearity: a review of methods to deal with it and a simulation study evaluating their performance

(2012) Carsten F. Dormann et al.   ECOGRAPHY

Influence of grain size on species–habitat models

(2011) Thomas K. Gottschalk et al.   ECOLOGICAL MODELLING

Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents

(2011) W. D. Kissling et al.   JOURNAL OF BIOGEOGRAPHY

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions

(2010) Otso Ovaskainen et al.   ECOLOGY

Matters of Scale

(2010) B. J. McGill   SCIENCE

Niches and distributional areas: Concepts, methods, and assumptions

(2009) J. Soberon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA