Uncovering hidden spatial structure in species communities with spatially explicit joint species distribution models

Inferring biotic interactions from proxies

(2015) Ignacio Morales-Castilla et al.   TRENDS IN ECOLOGY & EVOLUTION

Generating realistic assemblages with a joint species distribution model

(2015) David J. Harris   Methods in Ecology and Evolution

Spatial factor analysis: a new tool for estimating joint species distributions and correlations in species range

(2015) James T. Thorson et al.   Methods in Ecology and Evolution

Incorporating dominant species as proxies for biotic interactions strengthens plant community models

(2014) Peter C. le Roux et al.   JOURNAL OF ECOLOGY

Matrix models for quantifying competitive intransitivity from species abundance data

(2014) Werner Ulrich et al.   OIKOS

Bryophyte Species Richness on Retention Aspens Recovers in Time but Community Structure Does Not

(2014) Anna Oldén et al.   PLoS One

Estimating Abundances of Interacting Species Using Morphological Traits, Foraging Guilds, and Habitat

(2014) Robert M. Dorazio et al.   PLoS One

Model-based approaches to unconstrained ordination

(2014) Francis K.C. Hui et al.   Methods in Ecology and Evolution

Understanding co-occurrence by modelling species simultaneously with a Joint Species Distribution Model (JSDM)

(2014) Laura J. Pollock et al.   Methods in Ecology and Evolution

The fourth-corner solution - using predictive models to understand how species traits interact with the environment

(2014) Alexandra M. Brown et al.   Methods in Ecology and Evolution

Community-level vs species-specific approaches to model selection

(2013) Bénédicte Madon et al.   ECOGRAPHY

More than the sum of the parts: forest climate response from joint species distribution models

(2013) James S. Clark et al.   ECOLOGICAL APPLICATIONS

To mix or not to mix: comparing the predictive performance of mixture models vs. separate species distribution models

(2013) Francis K. C. Hui et al.   ECOLOGY

Range expansion through fragmented landscapes under a variable climate

(2013) Jonathan Bennie et al.   ECOLOGY LETTERS

Assessing Community-Level and Single-Species Models Predictions of Species Distributions and Assemblage Composition after 25 Years of Land Cover Change

(2013) Sébastien Bonthoux et al.   PLoS One

Combining food web and species distribution models for improved community projections

(2013) Loïc Pellissier et al.   Ecology and Evolution

The role of biotic interactions in shaping distributions and realised assemblages of species: implications for species distribution modelling

(2012) Mary Susanne Wisz et al.   BIOLOGICAL REVIEWS

Community ecology in the age of multivariate multiscale spatial analysis

(2012) S. Dray et al.   ECOLOGICAL MONOGRAPHS

Seeing the forest and the trees: multilevel models reveal both species and community patterns

(2012) Michelle M. Jackson et al.   Ecosphere

Sparse Bayesian infinite factor models

(2011) A. Bhattacharya et al.   BIOMETRIKA

The role of functional traits in species distributions revealed through a hierarchical model

(2011) Laura J. Pollock et al.   ECOGRAPHY

Random-effects ordination: describing and predicting multivariate correlations and co-occurrences

(2011) Steven C. Walker et al.   ECOLOGICAL MONOGRAPHS

Generalized linear mixed models for phylogenetic analyses of community structure

(2011) Anthony R. Ives et al.   ECOLOGICAL MONOGRAPHS

Towards novel approaches to modelling biotic interactions in multispecies assemblages at large spatial extents

(2011) W. D. Kissling et al.   JOURNAL OF BIOGEOGRAPHY

Empirical approaches to metacommunities: a review and comparison with theory

(2011) Jürg B. Logue et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenetic Metrics of Community Similarity

(2010) Anthony R. Ives et al.   AMERICAN NATURALIST

Modeling large scale species abundance with latent spatial processes

(2010) Avishek Chakraborty et al.   Annals of Applied Statistics

Model based grouping of species across environmental gradients

(2010) Piers K. Dunstan et al.   ECOLOGICAL MODELLING

Modeling species co-occurrence by multivariate logistic regression generates new hypotheses on fungal interactions

(2010) Otso Ovaskainen et al.   ECOLOGY

Models for inference in dynamic metacommunity systems

(2010) Robert M. Dorazio et al.   ECOLOGY

Making more out of sparse data: hierarchical modeling of species communities

(2010) Otso Ovaskainen et al.   ECOLOGY

Predicting insect phenology across space and time

(2010) J. A. HODGSON et al.   GLOBAL CHANGE BIOLOGY

Testing the heterospecific attraction hypothesis with time-series data on species co-occurrence

(2010) E. Sebastian-Gonzalez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coefficients of Determination in Logistic Regression Models—A New Proposal: The Coefficient of Discrimination

(2009) Tue Tjur   AMERICAN STATISTICIAN

Multi-species occurrence models to evaluate the effects of conservation and management actions

(2009) Elise F. Zipkin et al.   BIOLOGICAL CONSERVATION

Modeling the effects of environmental disturbance on wildlife communities: avian responses to prescribed fire

(2009) Robin E. Russell et al.   ECOLOGICAL APPLICATIONS

Species richness and occupancy estimation in communities subject to temporary emigration

(2009) Marc Kéry et al.   ECOLOGY

Hierarchical models facilitate spatial analysis of large data sets: a case study on invasive plant species in the northeastern United States

(2009) A. M. Latimer et al.   ECOLOGY LETTERS