Identification of miRNAs and Their Targets Involved in Flower and Fruit Development across Domesticated and Wild Capsicum Species

The Control of Developmental Phase Transitions by microRNAs and Their Targets in Seed Plants

(2020) Jingyi Ma et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Critical Role of miRNAs in Regulation of Flowering Time and Flower Development

(2020) Saquib Waheed et al.   Genes

The interaction between miR160 and miR165/166 in the control of leaf development and drought tolerance in Arabidopsis

(2019) Tianxiao Yang et al.   Scientific Reports

1-Aminocyclopropane-1-Carboxylic Acid Oxidase (ACO): The Enzyme That Makes the Plant Hormone Ethylene

(2019) Maarten Houben et al.   Frontiers in Plant Science

Arabidopsis class II TCP transcription factors integrate with the FT-FD module to control flowering

(2019) Daibo Li et al.   PLANT PHYSIOLOGY

Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp.

(2019) Carlos Lopez-Ortiz et al.   PLoS One

Biology and Function of miR159 in Plants

(2019) Anthony A. Millar et al.   Plants-Basel

Analysis of the MIR160 gene family and the role of MIR160a_A05 in regulating fiber length in cotton

(2019) Guoyuan Liu et al.   PLANTA

Functional Analysis of Pepper F-box Protein CaDIF1 and Its Interacting Partner CaDIS1: Modulation of ABA Signaling and Drought Stress Response

(2019) Junsub Lim et al.   Frontiers in Plant Science

Overexpression of TCP8 delays Arabidopsis flowering through a FLOWERING LOCUS C-dependent pathway

(2019) Xiaoyan Wang et al.   BMC PLANT BIOLOGY

The role of miR319a and its target gene TCP4 in the regulation of pistil development in Prunus mume

(2018) Wanxu Wang et al.   GENOME

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Wild Relatives of Maize, Rice, Cotton, and Soybean: Treasure Troves for Tolerance to Biotic and Abiotic Stresses

(2018) Jafar Mammadov et al.   Frontiers in Plant Science

Characterization of the hot pepper (Capsicum frutescens) fruit ripening regulated by ethylene and ABA

(2018) Bing-Zhu Hou et al.   BMC PLANT BIOLOGY

Elevated carbon dioxide and drought modulate physiology and storage-root development in sweet potato by regulating microRNAs

(2018) Thangasamy Saminathan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Small RNAs, emerging regulators critical for the development of horticultural traits

(2018) Chengjie Chen et al.   Horticulture Research

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing

(2018) Chenna Swetha et al.   PLANT CELL

Effect of ghost pepper on cell proliferation, apoptosis, senescence and global proteomic profile in human renal adenocarcinoma cells

(2018) Venu Perla et al.   PLoS One

Identification and characterization of novel microRNAs for fruit development and quality in hot pepper (Capsicum annuum L.)

(2017) Zhoubin Liu et al.   GENE

Comparative Analysis of Fruit Ripening-Related miRNAs and Their Targets in Blueberry Using Small RNA and Degradome Sequencing

(2017) Yanming Hou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

microRNA159-targeted SlGAMYB transcription factors are required for fruit set in tomato

(2017) Eder Marques da Silva et al.   PLANT JOURNAL

Small RNAs: Big Impact on Plant Development

(2017) Marco D’Ario et al.   TRENDS IN PLANT SCIENCE

SGS3 Cooperates with RDR6 in Triggering Geminivirus-Induced Gene Silencing and in Suppressing Geminivirus Infection in Nicotiana Benthamiana

(2017) Fangfang Li et al.   Viruses-Basel

Functional Roles of microRNAs in Agronomically Important Plants—Potential as Targets for Crop Improvement and Protection

(2017) Arnaud T. Djami-Tchatchou et al.   Frontiers in Plant Science

MicroRNA and Transcription Factor: Key Players in Plant Regulatory Network

(2017) Abdul F. A. Samad et al.   Frontiers in Plant Science

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

The miR396b ofPoncirus trifoliataFunctions in Cold Tolerance by Regulating ACC Oxidase Gene Expression and Modulating Ethylene–Polyamine Homeostasis

(2016) Xiaona Zhang et al.   PLANT AND CELL PHYSIOLOGY

A common miRNA160-based mechanism regulates ovary patterning, floral organ abscission and lamina outgrowth in tomato

(2016) Subha Damodharan et al.   PLANT JOURNAL

Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana

(2016) Mingli Xu et al.   PLoS Genetics

Genome-wide Diversity and Association Mapping for Capsaicinoids and Fruit Weight in Capsicum annuum L

(2016) Padma Nimmakayala et al.   Scientific Reports

Potential functions of microRNAs in starch metabolism and development revealed by miRNA transcriptome profiling of cassava cultivars and their wild progenitor

(2015) Xin Chen et al.   BMC PLANT BIOLOGY

Transcription profiling of the chilling requirement for bud break in apples: a putative role for FLC-like genes

(2015) Diogo Denardi Porto et al.   JOURNAL OF EXPERIMENTAL BOTANY

Central role ofFaGAMYBin the transition of the strawberry receptacle from development to ripening

(2015) José G. Vallarino et al.   NEW PHYTOLOGIST

Floral induction and flower formation-the role and potential applications of miRNAs

(2015) Yiguo Hong et al.   PLANT BIOTECHNOLOGY JOURNAL

AmicroRNAallele that emerged prior to apple domestication may underlie fruit size evolution

(2015) Jia-Long Yao et al.   PLANT JOURNAL

Identification of microRNAs in two species of tomato, Solanum lycopersicum and Solanum habrochaites, by deep sequencing

(2015) Shan-shan FAN et al.   Journal of Integrative Agriculture

Identification and characterization of miRNAs in ripening fruit of Lycium barbarum L. using high-throughput sequencing

(2015) Shaohua Zeng et al.   Frontiers in Plant Science

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening

(2015) Weiwei Chen et al.   Scientific Reports

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

Tissue specific analysis reveals a differential organization and regulation of both ethylene biosynthesis and E8 during climacteric ripening of tomato

(2014) Bram Van de Poel et al.   BMC PLANT BIOLOGY

A Novel F-Box Protein CaF-Box Is Involved in Responses to Plant Hormones and Abiotic Stress in Pepper (Capsicum annuum L.)

(2014) Rugang Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stress-induced early flowering is mediated by miR169 in Arabidopsis thaliana

(2013) Miao Yun Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis

(2013) Rumyana Karlova et al.   JOURNAL OF EXPERIMENTAL BOTANY

A New Tomato NAC (NAM/ATAF1/2/CUC2) Transcription Factor, SlNAC4, Functions as a Positive Regulator of Fruit Ripening and Carotenoid Accumulation

(2013) Mingku Zhu et al.   PLANT AND CELL PHYSIOLOGY

Multiple Classes of Immune-Related Proteases Associated with the Cell Death Response in Pepper Plants

(2013) Chungyun Bae et al.   PLoS One

The Hot Pepper (Capsicum annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: A Foundation for Understanding MicroRNA Functional Roles in Hot Pepper

(2013) Dong-Gyu Hwang et al.   PLoS One

miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations

(2012) Hui Liu et al.   BMC PLANT BIOLOGY

Inhibition of lamina outgrowth following Solanum lycopersicum AUXIN RESPONSE FACTOR 10 (SlARF10) derepression

(2012) A. Hendelman et al.   PLANT MOLECULAR BIOLOGY

Dynamic Regulation of Novel and Conserved miRNAs Across Various Tissues of Diverse Cucurbit Species

(2012) Sumanth Manohar et al.   PLANT MOLECULAR BIOLOGY REPORTER

Integrative Comparative Analyses of Transcript and Metabolite Profiles from Pepper and Tomato Ripening and Development Stages Uncovers Species-Specific Patterns of Network Regulatory Behavior

(2012) S. Osorio et al.   PLANT PHYSIOLOGY

A Role for Nonsense-Mediated mRNA Decay in Plants: Pathogen Responses Are Induced in Arabidopsis thaliana NMD Mutants

(2012) Samantha Rayson et al.   PLoS One

TamiR159 Directed Wheat TaGAMYB Cleavage and Its Involvement in Anther Development and Heat Response

(2012) Yu Wang et al.   PLoS One

Fine mapping of fw3.2 controlling fruit weight in tomato

(2012) Na Zhang et al.   THEORETICAL AND APPLIED GENETICS

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

(2011) Qing-Xin Song et al.   BMC PLANT BIOLOGY

CLAVATA Signaling Pathway Receptors ofArabidopsisRegulate Cell Proliferation in Fruit Organ Formation as well as in Meristems

(2011) Amanda R. Durbak et al.   GENETICS

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening

(2011) R. Karlova et al.   PLANT CELL

Increase in Tomato Locule Number Is Controlled by Two Single-Nucleotide Polymorphisms Located Near WUSCHEL

(2011) S. Munos et al.   PLANT PHYSIOLOGY

An Antiviral Defense Role of AGO2 in Plants

(2011) Jagger J. W. Harvey et al.   PLoS One

Effector prediction in host-pathogen interaction based on a Markov model of a ubiquitous EPIYA motif

(2010) Shunfu Xu et al.   BMC GENOMICS

Over-expression of sly-miR156a in tomato results in multiple vegetative and reproductive trait alterations and partial phenocopy of thesftmutant

(2010) Xiaohui Zhang et al.   FEBS LETTERS

The N-glycan processing enzymes α-mannosidase and β-D-N-acetylhexosaminidase are involved in ripening-associated softening in the non-climacteric fruits of capsicum

(2010) Sumit Ghosh et al.   JOURNAL OF EXPERIMENTAL BOTANY

Small RNA sorting: matchmaking for Argonautes

(2010) Benjamin Czech et al.   NATURE REVIEWS GENETICS

A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening

(2010) Mi-Young Chung et al.   PLANT JOURNAL

MicroRNAs with macro-effects on plant stress responses

(2010) Ramanjulu Sunkar   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

A Collection of Target Mimics for Comprehensive Analysis of MicroRNA Function in Arabidopsis thaliana

(2010) Marco Todesco et al.   PLoS Genetics

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

The Sequential Action of miR156 and miR172 Regulates Developmental Timing in Arabidopsis

(2009) Gang Wu et al.   CELL

Non-climacteric fruit ripening in pepper: increased transcription of EIL-like genes normally regulated by ethylene

(2009) Sanghyeob Lee et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

miR319a targeting ofTCP4is critical for petal growth and development inArabidopsis

(2009) Anwesha Nag et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel and nodulation-regulated microRNAs in soybean roots

(2008) Senthil Subramanian et al.   BMC GENOMICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Plant Receptor-Like Serine Threonine Kinases: Roles in Signaling and Plant Defense

(2008) Ahmed J. Afzal et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

ArabidopsisSmall RNAs and Their Targets During Cyst Nematode Parasitism

(2008) Tarek Hewezi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

(2008) Witold Filipowicz et al.   NATURE REVIEWS GENETICS

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

TheSolanum lycopersicumauxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development

(2008) Maaike de Jong et al.   PLANT JOURNAL

Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata

(2008) S. P. Pandey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA