Strain inheritance and neonatal gut microbiota development: A meta-analysis

Development of the Microbiota and Associations With Birth Mode, Diet, and Atopic Disorders in a Longitudinal Analysis of Stool Samples, Collected From Infancy Through Early Childhood

(2020) Gianluca Galazzo et al.   GASTROENTEROLOGY

Diversity within species: interpreting strains in microbiomes

(2020) Thea Van Rossum et al.   NATURE REVIEWS MICROBIOLOGY

Strain-level epidemiology of microbial communities and the human microbiome

(2020) Yan Yan et al.   Genome Medicine

Maternal Fecal Microbiota Transplantation in Cesarean-Born Infants Rapidly Restores Normal Gut Microbial Development: A Proof-of-Concept Study

(2020) Katri Korpela et al.   CELL

Role of the microbiome in human development

(2019) Maria Gloria Dominguez-Bello et al.   GUT

Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth

(2019) Yan Shao et al.   NATURE

‘Vaginal seeding’ after a caesarean section provides benefits to newborn children: FOR: Does exposing caesarean‐delivered newborns to the vaginal microbiome affect their chronic disease risk? The critical need for trials of ‘vaginal seeding’ during caesarean section

(2019) Noel T Mueller et al.   BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY

Preventing dysbiosis of the neonatal mouse intestinal microbiome protects against late-onset sepsis

(2019) Jeffrey R. Singer et al.   NATURE MEDICINE

Impact of delivery mode-associated gut microbiota dynamics on health in the first year of life

(2019) Marta Reyman et al.   Nature Communications

Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

(2018) Moran Yassour et al.   Cell Host & Microbe

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

(2018) Pamela Ferretti et al.   Cell Host & Microbe

Selective maternal seeding and environment shape the human gut microbiome

(2018) Katri Korpela et al.   GENOME RESEARCH

Urbanization and the gut microbiota in health and inflammatory bowel disease

(2018) Tao Zuo et al.   Nature Reviews Gastroenterology & Hepatology

The germ-organ theory of non-communicable diseases

(2018) Mariana X. Byndloss et al.   NATURE REVIEWS MICROBIOLOGY

Genomic diversity and distribution of Bifidobacterium longum subsp. longum across the human lifespan

(2018) Toshitaka Odamaki et al.   Scientific Reports

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

BacDive in 2019: bacterial phenotypic data for High-throughput biodiversity analysis

(2018) Lorenz Christian Reimer et al.   NUCLEIC ACIDS RESEARCH

Short-term and long-term effects of caesarean section on the health of women and children

(2018) Jane Sandall et al.   LANCET

Temporal development of the gut microbiome in early childhood from the TEDDY study

(2018) Christopher J. Stewart et al.   NATURE

Colonocyte metabolism shapes the gut microbiota

(2018) Yael Litvak et al.   SCIENCE

Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life

(2018) Tommi Vatanen et al.   Nature Microbiology

New Insights into Human Nostril Microbiome from the Expanded Human Oral Microbiome Database (eHOMD): a Resource for the Microbiome of the Human Aerodigestive Tract

(2018) Isabel F. Escapa et al.   mSystems

The Human Microbiome and Child Growth – First 1000 Days and Beyond

(2018) Ruairi C. Robertson et al.   TRENDS IN MICROBIOLOGY

Microbial strain-level population structure and genetic diversity from metagenomes

(2017) Duy Tin Truong et al.   GENOME RESEARCH

The Neonatal Window of Opportunity: Setting the Stage for Life-Long Host-Microbial Interaction and Immune Homeostasis

(2017) Natalia Torow et al.   JOURNAL OF IMMUNOLOGY

Does a prenatal bacterial microbiota exist?

(2017) M Hornef et al.   Mucosal Immunology

Strains, functions and dynamics in the expanded Human Microbiome Project

(2017) Jason Lloyd-Price et al.   NATURE

Maturation of the infant microbiome community structure and function across multiple body sites and in relation to mode of delivery

(2017) Derrick M Chu et al.   NATURE MEDICINE

fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks

(2017) Chengsheng Zhu et al.   NUCLEIC ACIDS RESEARCH

Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling

(2017) Francesco Asnicar et al.   mSystems

Profiling Living Bacteria Informs Preparation of Fecal Microbiota Transplantations

(2017) Nathaniel D. Chu et al.   PLoS One

Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans

(2016) Tommi Vatanen et al.   CELL

The Human Microbiome before Birth

(2016) Martin J. Blaser et al.   Cell Host & Microbe

Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation

(2016) Hilary P. Browne et al.   NATURE

Diet-induced extinctions in the gut microbiota compound over generations

(2016) Erica D. Sonnenburg et al.   NATURE

Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer

(2016) Maria G Dominguez-Bello et al.   NATURE MEDICINE

Antibiotics, birth mode, and diet shape microbiome maturation during early life

(2016) Nicholas A. Bokulich et al.   Science Translational Medicine

“Vaginal seeding” of infants born by caesarean section

(2016) Aubrey J Cunnington et al.   BMJ-British Medical Journal

“Vaginal seeding” of infants born by caesarean section

(2016) Aubrey J Cunnington et al.   BMJ-British Medical Journal

Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life

(2015) Fredrik Bäckhed et al.   Cell Host & Microbe

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

(2015) Duy Tin Truong et al.   NATURE METHODS

The first microbial environment of infants born by C-section: the operating room microbes

(2015) Hakdong Shin et al.   Microbiome

Correlation Between Intraluminal Oxygen Gradient and Radial Partitioning of Intestinal Microbiota

(2014) Lindsey Albenberg et al.   GASTROENTEROLOGY

Prenatal exposure to antibiotics, cesarean section and risk of childhood obesity

(2014) N T Mueller et al.   INTERNATIONAL JOURNAL OF OBESITY

Intrapartum GBS screening and antibiotic prophylaxis: a European consensus conference

(2014) G. C. Di Renzo et al.   Journal of Maternal-Fetal & Neonatal Medicine

Persistent gut microbiota immaturity in malnourished Bangladeshi children

(2014) Sathish Subramanian et al.   NATURE

The Intestinal Microbiome in Early Life: Health and Disease

(2014) Marie-Claire Arrieta et al.   Frontiers in Immunology

The dynamics of a family’s gut microbiota reveal variations on a theme

(2014) Patrick D Schloss et al.   Microbiome

Tolerance of Bifidobacterium human isolates to bile, acid and oxygen

(2013) Valérie Andriantsoanirina et al.   ANAEROBE

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE