Impact of the Miocene orogenesis on Kaloula spp. radiation and implication of local refugia on genetic diversification

Yellow sea mediated segregation between North East Asian Dryophytes species

(2020) Amaël Borzée et al.   PLoS One

A little frog leaps a long way: compounded colonizations of the Indian Subcontinent discovered in the tiny Oriental frog genus Microhyla (Amphibia: Microhylidae)

(2020) Vladislav A. Gorin et al.   PeerJ

Impact of the Mid-Pleistocene Revolution and Anthropogenic Factors on the Dispersion of Asian Black-Spined Toads (Duttaphrynus melanostictus)

(2020) Siti N. Othman et al.   Animals

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

Amphibian community structure along elevation gradients in eastern Nepal Himalaya

(2019) Janak R. Khatiwada et al.   BMC ECOLOGY

Relict distribution of Microhyla (Amphibia: Microhylidae) in the Ryukyu Archipelago: High diversity in East Asia maintained by insularization

(2019) Atsushi Tominaga et al.   ZOOLOGICA SCRIPTA

Osteology of the Asian narrow‐mouth toad Kaloula borealis (Amphibia, Anura, Microhylidae) with comments on its osteological adaptation to fossorial life

(2019) Meihua Zhang et al.   ACTA ZOOLOGICA

The complete mitogenome of Microhyla fissipes (Anura: Microhylidae) and phylogenetic analysis using GenBank data mining

(2019) Ning Han et al.   Mitochondrial DNA Part B-Resources

Reliable Confidence Intervals for RelTime Estimates of Evolutionary Divergence Times

(2019) Qiqing Tao et al.   MOLECULAR BIOLOGY AND EVOLUTION

Theoretical Foundation of the RelTime Method for Estimating Divergence Times from Variable Evolutionary Rates

(2018) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

A large-scale phylogeny of Microhylidae inferred from a combined dataset of 121 genes and 427 taxa

(2018) Na Tu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

A new strategy to infer circularity applied to four new complete frog mitogenomes

(2018) Denis Jacob Machado et al.   Ecology and Evolution

The complete mitochondrial genome of the Kaloula verrucosa (Anura: Microhylidae) and phylogenetic analyses

(2018) Shouhong Wang et al.   Mitochondrial DNA Part B-Resources

The Yanshan orogeny and late Mesozoic multi-plate convergence in East Asia—Commemorating 90th years of the “Yanshan Orogeny”

(2018) Shuwen Dong et al.   Science China-Earth Sciences

Impact of Orogeny and Environmental Change on Genetic Divergence and Demographic History of Dipus sagitta (Dipodoidea, Dipodinae) since the Pliocene in Inland East Asia

(2017) Jilong Cheng et al.   JOURNAL OF MAMMALIAN EVOLUTION

Diversity and phylogeography of Northeast Asian brown frogs allied to Rana dybowskii (Anura, Ranidae)

(2017) Bao-Tian Yang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeographic and population insights of the Asian common toad (Bufo gargarizans) in Korea and China: population isolation and expansions as response to the ice ages

(2017) Amaël Borzée et al.   PeerJ

Pathogenic lineage of Perkinsea associated with mass mortality of frogs across the United States

(2017) Marcos Isidoro-Ayza et al.   Scientific Reports

Phylogeography reveals an ancient cryptic radiation in East-Asian tree frogs (Hyla japonica group) and complex relationships between continental and island lineages

(2016) Christophe Dufresnes et al.   BMC EVOLUTIONARY BIOLOGY

Red River barrier and Pleistocene climatic fluctuations shaped the genetic structure ofMicrohyla fissipescomplex (Anura: Microhylidae) in southern China and Indochina

(2016) Zhi-Yong Yuan et al.   Current Zoology

Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs

(2016) Alana M. Alexander et al.   EVOLUTION

Global plate boundary evolution and kinematics since the late Paleozoic

(2016) Kara J. Matthews et al.   GLOBAL AND PLANETARY CHANGE

Influence of geology and human activity on the genetic structure and demography of the Oriental fire-bellied toad ( Bombina orientalis )

(2016) Jonathan J. Fong et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices

(2016) Olga Chernomor et al.   SYSTEMATIC BIOLOGY

Spatiotemporal Diversification of the True Frogs (GenusRana): A Historical Framework for a Widely Studied Group of Model Organisms

(2016) Zhi-Yong Yuan et al.   SYSTEMATIC BIOLOGY

Red River barrier and Pleistocene climatic fluctuations shaped the genetic structure ofMicrohyla fissipescomplex (Anura: Microhylidae) in southern China and Indochina

(2016) Zhi-Yong Yuan et al.   Current Zoology

The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae)

(2015) Pedro L.V. Peloso et al.   CLADISTICS

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

(2015) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Qingzang movement: The major uplift of the Qinghai-Tibetan Plateau

(2015) JiJun Li et al.   Science China-Earth Sciences

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Biogeographical role of the Kuroshio Current in the amphibious mudskipper Periophthalmus modestus indicated by mitochondrial DNA data

(2015) Lijun He et al.   Scientific Reports

Complete mitochondrial genome sequence of the Sichuan digging frog Kaloula rugifera (Anura: Microhylidae)

(2015) Lichun Jiang et al.   Mitochondrial DNA Part A

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

(2014) Adrien Favre et al.   BIOLOGICAL REVIEWS

OriginPro 9.1: Scientific Data Analysis and Graphing Software—Software Review

(2014) E. Seifert   Journal of Chemical Information and Modeling

The complete mitochondrial genome ofMicrohyla pulchra(Amphidia, Anura, Microhylidae)

(2014) Xiaoyou Wu et al.   Mitochondrial DNA

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus assessment of phylogenetic relationships in Alytes (Anura, Alytidae)

(2014) Bruno Maia-Carvalho et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Postglacial range shift and demographic expansion of the marine intertidal snailBatillaria attramentaria

(2014) Phuong-Thao Ho et al.   Ecology and Evolution

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

A New Gliding Frog of the GenusRhacophorusfrom Borneo

(2014) Masafumi Matsui et al.   CURRENT HERPETOLOGY

A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana

(2013) Jeremy M Beaulieu et al.   BMC EVOLUTIONARY BIOLOGY

AN ADAPTIVE RADIATION OF FROGS IN A SOUTHEAST ASIAN ISLAND ARCHIPELAGO

(2013) David C. Blackburn et al.   EVOLUTION

Efficient Sequencing of Anuran mtDNAs and a Mitogenomic Exploration of the Phylogeny and Evolution of Frogs

(2013) Peng Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Analysis of Biogeography when the Number of Areas is Large

(2013) Michael J. Landis et al.   SYSTEMATIC BIOLOGY

A new species of Kaloula (Amphibia: Anura: Microhylidae) from southern Guangxi, China

(2013) YUNMING MO et al.   ZOOTAXA

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera

(2012) Rafael O de Sá et al.   BMC EVOLUTIONARY BIOLOGY

Magnetostratigraphy of the Xihe loess-soil sequence and implication for late Neogene deformation of the West Qinling Mountains

(2012) Junyi Ge et al.   GEOPHYSICAL JOURNAL INTERNATIONAL

Phylogeography of the Korean pine (Pinus koraiensis) in northeast Asia: inferences from organelle gene sequences

(2012) Mineaki Aizawa et al.   JOURNAL OF PLANT RESEARCH

Complete mitochondrial genome of the boreal digging frogKaloula borealis(Anura, Microhylidae)

(2012) Dae-Sik Hwang et al.   Mitochondrial DNA

Geological events play a larger role than Pleistocene climatic fluctuations in driving the genetic structure ofQuasipaa boulengeri(Anura: Dicroglossidae)

(2012) Fang Yan et al.   MOLECULAR ECOLOGY

Speciation in theRana chensinensisspecies complex and its relationship to the uplift of the Qinghai-Tibetan Plateau

(2012) WEI-WEI ZHOU et al.   MOLECULAR ECOLOGY

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic resolution and systematics of the Asian tree frogs,Rhacophorus(Rhacophoridae, Amphibia)

(2012) Jia-Tang Li et al.   ZOOLOGICA SCRIPTA

Phylogenetic and taxonomic relationships of thePolypedates leucomystaxcomplex (Amphibia)

(2012) NORIHIRO KURAISHI et al.   ZOOLOGICA SCRIPTA

Cryptic Anuran Biodiversity in Bangladesh Revealed by Mitochondrial 16S rRNA Gene Sequences

(2012) Mahmudul Hasan et al.   ZOOLOGICAL SCIENCE

From Antarctica or Asia? New colonization scenario for Australian-New Guinean narrow mouth toads suggested from the findings on a mysterious genus Gastrophrynoides

(2011) Atsushi Kurabayashi et al.   BMC EVOLUTIONARY BIOLOGY

Exploring Patterns and Extent of Bias in Estimating Divergence Time from Mitochondrial DNA Sequence Data in a Particular Lineage: A Case Study of Salamanders (Order Caudata)

(2011) Y. Zheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

A phylogeographic, demographic and historical analysis of the short-tailed pit viper (Gloydius brevicaudus): evidence for early divergence and late expansion during the Pleistocene

(2011) LI DING et al.   MOLECULAR ECOLOGY

Past and present: Phylogeography of the Bufo gargarizans species complex inferred from multi-loci allele sequence and frequency data

(2011) Aibin Zhan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Systematic relationships of Oriental tiny frogs of the family Microhylidae (Amphibia, Anura) as revealed by mtDNA genealogy

(2011) Masafumi Matsui et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Elevational Patterns of Species Richness, Range and Body Size for Spiny Frogs

(2011) Junhua Hu et al.   PLoS One

Geographic Variation in Advertisement Calls in a Tree Frog Species: Gene Flow and Selection Hypotheses

(2011) Yikweon Jang et al.   PLoS One

Morphology of Kaloula rugifera and K. borealis Tadpoles (Anura: Microhylidae: Kaloula verrucosa Group) in China

(2011) ZHOU Bing et al.   Asian Herpetological Research

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Nuclear and chloroplast DNA phylogeography reveal two refuge areas with asymmetrical gene flow in a temperate walnut tree from East Asia

(2010) Wei-Ning Bai et al.   NEW PHYTOLOGIST

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Phylogeography and Demographic History of Chinese Black-Spotted Frog Populations (Pelophylax nigromaculata): Evidence for Independent Refugia Expansion and Secondary Contact

(2008) Hua Zhang et al.   BMC EVOLUTIONARY BIOLOGY

PATTERNS OF ENDEMISM AND SPECIES RICHNESS IN MALAGASY COPHYLINE FROGS SUPPORT A KEY ROLE OF MOUNTAINOUS AREAS FOR SPECIATION

(2008) Katharina C. Wollenberg et al.   EVOLUTION

Postglacial Sea-Level Change of the Korean Southern Sea Shelf

(2008) Yeon Gyu Lee et al.   JOURNAL OF COASTAL RESEARCH

The boundary of palaearctic and oriental realms in western China

(2008) Ling Chen et al.   Progress in Natural Science-Materials International

Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis

(2008) Richard H. Ree et al.   SYSTEMATIC BIOLOGY

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY

Paleoenvironmental studies of the Korean peninsula inferred from diatom assemblages

(2007) Eunyoung Ryu et al.   QUATERNARY INTERNATIONAL

Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers

(2003) L. Lacey Knowles   MOLECULAR ECOLOGY