Impact of the Mid-Pleistocene Revolution and Anthropogenic Factors on the Dispersion of Asian Black-Spined Toads (Duttaphrynus melanostictus)

New microhylid frog genus from Peninsular India with Southeast Asian affinity suggests multiple Cenozoic biotic exchanges between India and Eurasia

(2019) Sonali Garg et al.   Scientific Reports

Abundance, distribution and spread of the invasive Asian toad Duttaphrynus melanostictus in eastern Madagascar

(2019) Fulvio Licata et al.   BIOLOGICAL INVASIONS

RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

(2019) Alexey M Kozlov et al.   BIOINFORMATICS

To split or not to split? Multilocus phylogeny and molecular species delimitation of southeast Asian toads (family: Bufonidae)

(2019) Kin Onn Chan et al.   BMC EVOLUTIONARY BIOLOGY

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

(2019) Remco Bouckaert et al.   PLoS Computational Biology

Widespread vulnerability of Malagasy predators to the toxins of an introduced toad

(2018) Benjamin Michael Marshall et al.   CURRENT BIOLOGY

The prehistoric peopling of Southeast Asia

(2018) Hugh McColl et al.   SCIENCE

Filling the BINs of life: Report of an amphibian and reptile survey of the Tanintharyi (Tenasserim) Region of Myanmar, with DNA barcode data

(2018) Daniel G. Mulcahy et al.   ZooKeys

Are Hong Kong and Taiwan stepping-stones for invasive species to the mainland of China?

(2018) Jianbo Lu et al.   Ecology and Evolution

Description of two new sympatric species of the genus Leptolalax (Anura: Megophryidae) from western Yunnan of China

(2018) Jian-Huan Yang et al.   PeerJ

Isolation by distance versus landscape resistance: Understanding dominant patterns of genetic structure in Northern Spotted Owls (Strix occidentalis caurina)

(2018) Mark P. Miller et al.   PLoS One

Multiple refugia from penultimate glaciations in East Asia demonstrated by phylogeography and ecological modelling of an insect pest

(2018) Wei Song et al.   BMC EVOLUTIONARY BIOLOGY

Genetic diversity of Morato's Digger Toad, Proceratophrys moratoi: spatial structure, gene flow, effective size and the need for differential management strategies of populations

(2017) Mauricio P. Arruda et al.   GENETICS AND MOLECULAR BIOLOGY

Toxic toad invasion of Wallacea: A biodiversity hotspot characterized by extraordinary endemism

(2017) Sean B. Reilly et al.   GLOBAL CHANGE BIOLOGY

Impact of glacial/interglacial sea level change on the ocean nitrogen cycle

(2017) Haojia Ren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uplift-driven diversification in the Hengduan Mountains, a temperate biodiversity hotspot

(2017) Yaowu Xing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Causes of ice age intensification across the Mid-Pleistocene Transition

(2017) Thomas B. Chalk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Habitat predictors of genetic diversity for two sympatric wetland-breeding amphibian species

(2017) Anna M. McKee et al.   Ecology and Evolution

Late Pleistocene songbirds of Liang Bua (Flores, Indonesia); the first fossil passerine fauna described from Wallacea

(2017) Hanneke J.M. Meijer et al.   PeerJ

Phylogeographic investigation and ecological niche modelling of the endemic frog species Nanorana pleskei revealed multiple refugia in the eastern Tibetan Plateau

(2017) Bin Wang et al.   PeerJ

Phylogeographic and population insights of the Asian common toad (Bufo gargarizans) in Korea and China: population isolation and expansions as response to the ice ages

(2017) Amaël Borzée et al.   PeerJ

The reanalysis of biogeography of the Asian tree frog, Rhacophorus (Anura: Rhacophoridae): geographic shifts and climatic change influenced the dispersal process and diversification

(2017) Tao Pan et al.   PeerJ

Deep genetic structure and ecological divergence in a widespread human commensal toad

(2016) Guinevere O. U. Wogan et al.   Biology Letters

Quantifying the legacy of the Chinese Neolithic on the maternal genetic heritage of Taiwan and Island Southeast Asia

(2016) Andreia Brandão et al.   HUMAN GENETICS

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

(2016) Robert Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Modelling human presence and environmental dynamics during the Mid-Pleistocene Revolution: New approaches and tools

(2016) J. Rodríguez et al.   QUATERNARY INTERNATIONAL

The oldest Hoabinhian technocomplex in Asia (43.5 ka) at Xiaodong rockshelter, Yunnan Province, southwest China

(2016) Xueping Ji et al.   QUATERNARY INTERNATIONAL

Global threats from invasive alien species in the twenty-first century and national response capacities

(2016) Regan Early et al.   Nature Communications

tcsBU: a tool to extend TCS network layout and visualization

(2015) António Múrias dos Santos et al.   BIOINFORMATICS

Human settlement history between Sunda and Sahul: a focus on East Timor (Timor-Leste) and the Pleistocenic mtDNA diversity

(2015) Sibylle M Gomes et al.   BMC GENOMICS

Occurrence of Amphibians in Saline Habitats: A Review and Evolutionary Perspective

(2015) Gareth R. Hopkins et al.   HERPETOLOGICAL MONOGRAPHS

RASP (Reconstruct Ancestral State in Phylogenies): A tool for historical biogeography

(2015) Yan Yu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The role of orbital forcing in the Early Middle Pleistocene Transition

(2015) Mark A. Maslin et al.   QUATERNARY INTERNATIONAL

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Phylogeography of Nanorana parkeri (Anura: Ranidae) and multiple refugia on the Tibetan Plateau revealed by mitochondrial and nuclear DNA

(2015) Jun Liu et al.   Scientific Reports

The New Toad in Town: Distribution of the Asian Toad, Duttaphrynus Melanostictus, in the Toamasina Area of Eastern Madagascar

(2015) Maya Moore et al.   Tropical Conservation Science

Phylogenetic Patterns of the Southeast Asian Tree Frog Chiromantis hansenae in Thailand

(2015) YODTHONG Siriporn et al.   Asian Herpetological Research

Stop Madagascar's toad invasion now

(2014) Jonathan E. Kolby   NATURE

Historical distribution of Sundaland’s Dipterocarp rainforests at Quaternary glacial maxima

(2014) Niels Raes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Continuity of mammalian fauna over the last 200,000 y in the Indian subcontinent

(2014) P. Roberts et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STRUCTURE PLOT: a program for drawing elegant STRUCTURE bar plots in user friendly interface

(2014) Ramesh Ramasamy et al.   SpringerPlus

The palaeogeography of Sundaland and Wallacea since the Late Jurassic

(2013) Robert Hall   JOURNAL OF LIMNOLOGY

How complex is the Bufo bufo species group?

(2013) Jan W. Arntzen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Palaeoenvironmental change in tropical Australasia over the last 30,000 years – a synthesis by the OZ-INTIMATE group

(2013) Jessica M. Reeves et al.   QUATERNARY SCIENCE REVIEWS

Cryptic Torrent Frogs of Myanmar: An Examination of the Amolops marmoratus Species Complex with the Resurrection of Amolops afghanus and the Identification of a New Species

(2012) Jennifer A. Dever et al.   COPEIA

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Trees and/or networks to display intraspecific DNA sequence variation?

(2012) PATRICK MARDULYN   MOLECULAR ECOLOGY

Geological events play a larger role than Pleistocene climatic fluctuations in driving the genetic structure ofQuasipaa boulengeri(Anura: Dicroglossidae)

(2012) Fang Yan et al.   MOLECULAR ECOLOGY

Phylogeography and Demographic History of Babina pleuraden (Anura, Ranidae) in Southwestern China

(2012) Zejun Li et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Testing Hypotheses of Pleistocene Population History Using Coalescent Simulations: Refugial Isolation and Secondary Contact in Pseudepidalea raddei (Amphibia: Bufonidae)

(2012) DONG Bingjun et al.   Asian Herpetological Research

Late Pleistocene lake and glaciation evolution on the northeastern Qinghai–Tibetan Plateau: a review

(2011) QiShun Fan et al.   Environmental Earth Sciences

Phylogenetic relationships of the Rhacophorus everetti-group and implications for the evolution of reproductive modes in Philautus (Amphibia: Anura: Rhacophoridae)

(2011) Stefan T. Hertwig et al.   ZOOLOGICA SCRIPTA

Biogeography and conservation in Southeast Asia: how 2.7 million years of repeated environmental fluctuations affect today’s patterns and the future of the remaining refugial-phase biodiversity

(2010) David S. Woodruff   BIODIVERSITY AND CONSERVATION

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

(2010) Wenjie Deng et al.   BIOTECHNIQUES

Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation

(2010) Ryan C Garrick et al.   BMC EVOLUTIONARY BIOLOGY

Formation and fate of sedimentary depocentres on Southeast Asia's Sunda Shelf over the past sea-level cycle and biogeographic implications

(2010) Till J.J. Hanebuth et al.   EARTH-SCIENCE REVIEWS

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Phylogeography and historical demography of Polypedates leucomystax in the islands of Indonesia and the Philippines: Evidence for recent human-mediated range expansion?

(2010) Rafe M. Brown et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Forest contraction in north equatorial Southeast Asia during the Last Glacial Period

(2010) C. M. Wurster et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia

(2010) J. Che et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glacial Paleoceanography off the Mouth of the Mekong River, Southern South China Sea, During the last 500 ka

(2010) Qianyu Li et al.   QUATERNARY RESEARCH

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Toad radiation reveals into-India dispersal as a source of endemism in the Western Ghats-Sri Lanka biodiversity hotspot

(2009) Ines Van Bocxlaer et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeography of the Alcippe morrisonia (Aves: Timaliidae): long population history beyond late Pleistocene glaciations

(2009) Gang Song et al.   BMC EVOLUTIONARY BIOLOGY

Ecological Change, Range Fluctuations and Population Dynamics during the Pleistocene

(2009) Michael Hofreiter et al.   CURRENT BIOLOGY

Phylogenetic relationships of Ansonia from Southeast Asia inferred from mitochondrial DNA sequences: Systematic and biogeographic implications (Anura: Bufonidae)

(2009) Masafumi Matsui et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Systematics of a widespread Southeast Asian frog,Rana chalconota(Amphibia: Anura: Ranidae)

(2009) ROBERT F. INGER et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A coalescent framework for comparing alternative models of population structure with genetic data: evolution of Celebes toads

(2008) B. J Evans et al.   Biology Letters

Efficiency of Markov Chain Monte Carlo Tree Proposals in Bayesian Phylogenetics

(2008) Clemens Lakner et al.   SYSTEMATIC BIOLOGY

Additional vertebrate remains from one of the Late Pleistocene—Holocene Kurnool Caves (Muchchatla Chintamanu Gavi) of South India

(2007) Rajeev Patnaik et al.   QUATERNARY INTERNATIONAL

The biogeographical relations of the frogs and snakes of Sundaland

(2003) Robert F. Inger et al.   JOURNAL OF BIOGEOGRAPHY