Bioinformatics and system biology approach to identify the influences of SARS-CoV-2 infections to idiopathic pulmonary fibrosis and chronic obstructive pulmonary disease patients

Identification of biomarkers and pathways for the SARS-CoV-2 infections that make complexities in pulmonary arterial hypertension patients

(2021) Tasnimul Alam Taz et al.   BRIEFINGS IN BIOINFORMATICS

Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro

(2020) Manli Wang et al.   CELL RESEARCH

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and coronavirus disease-2019 (COVID-19): The epidemic and the challenges

(2020) Chih-Cheng Lai et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Clinical Characteristics of 138 Hospitalized Patients With 2019 Novel Coronavirus–Infected Pneumonia in Wuhan, China

(2020) Dawei Wang et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study

(2020) Nanshan Chen et al.   LANCET

MicroRNA Biomarker hsa-miR-195-5p for Detecting the Risk of Lung Cancer

(2020) Lei Li et al.   International Journal of Genomics

The liver in times of COVID-19: What hepatologists should know

(2020) Ezequiel Ridruejo et al.   Annals of Hepatology

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19

(2020) Daniel Blanco-Melo et al.   CELL

COVID-19 pandemic and the skin: what should dermatologists know?

(2020) Razvigor Darlenski et al.   CLINICS IN DERMATOLOGY

Coronaviruses and the cardiovascular system: acute and long-term implications

(2020) Tian-Yuan Xiong et al.   EUROPEAN HEART JOURNAL

ACE-2 expression in the small airway epithelia of smokers and COPD patients: implications for COVID-19

(2020) Janice M. Leung et al.   EUROPEAN RESPIRATORY JOURNAL

Comorbidity and its impact on 1590 patients with COVID-19 in China: a nationwide analysis

(2020) Wei-jie Guan et al.   EUROPEAN RESPIRATORY JOURNAL

Hydroxychloroquine and azithromycin as a treatment of COVID-19: results of an open-label non-randomized clinical trial

(2020) Philippe Gautret et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

World Health Organization declares global emergency: A review of the 2019 novel coronavirus (COVID-19)

(2020) Catrin Sohrabi et al.   International Journal of Surgery

Covid-19: risk factors for severe disease and death

(2020) Rachel E Jordan et al.   BMJ-British Medical Journal

Pulmonary fibrosis and COVID-19: the potential role for antifibrotic therapy

(2020) Peter M George et al.   Lancet Respiratory Medicine

Are patients with hypertension and diabetes mellitus at increased risk for COVID-19 infection?

(2020) Lei Fang et al.   Lancet Respiratory Medicine

Smoking Upregulates Angiotensin-Converting Enzyme-2 Receptor: A Potential Adhesion Site for Novel Coronavirus SARS-CoV-2 (Covid-19)

(2020) Samuel James Brake et al.   Journal of Clinical Medicine

Hydroxychloroquine, a less toxic derivative of chloroquine, is effective in inhibiting SARS-CoV-2 infection in vitro

(2020) Jia Liu et al.   Cell Discovery

Experimental Treatment with Favipiravir for COVID-19: An Open-Label Control Study

(2020) Qingxian Cai et al.   Engineering

Pathogenetic profiling of COVID-19 and SARS-like viruses

(2020) Zulkar Nain et al.   BRIEFINGS IN BIOINFORMATICS

Attenuated Novel SARS Coronavirus 2 Infection in an Allogeneic Hematopoietic Stem Cell Transplant Patient on Ruxolitinib

(2020) Francine M. Foss et al.   Clinical Lymphoma Myeloma & Leukemia

A cytokine super cyclone in COVID-19 patients with risk factors: the therapeutic potential of BCG immunization

(2020) Betcy Susan Johnson et al.   CYTOKINE & GROWTH FACTOR REVIEWS

Outcome of COVID‐19 in multiple myeloma patients in relation to treatment

(2020) Katharina Helene Susek et al.   EUROPEAN JOURNAL OF HAEMATOLOGY

COVID-19 and Liver

(2020) Dinesh Jothimani et al.   JOURNAL OF HEPATOLOGY

Matrix metalloproteinase 3 as a valuable marker for patients with COVID‐19

(2020) Shengjie Shi et al.   JOURNAL OF MEDICAL VIROLOGY

Evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) as coronavirus disease 2019 (COVID-19) pandemic: A global health emergency

(2020) Thamina Acter et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Severe COVID‐19 in a patient with chronic graft‐versus‐host disease after hematopoietic stem cell transplant successfully treated with ruxolitinib

(2020) Francesco Saraceni et al.   Transplant Infectious Disease

Tiotropium Is Predicted to Be a Promising Drug for COVID-19 Through Transcriptome-Based Comprehensive Molecular Pathway Analysis

(2020) Keunsoo Kang et al.   Viruses-Basel

Enanthem in Patients With COVID-19 and Skin Rash

(2020) Juan Jimenez-Cauhe et al.   JAMA Dermatology

COVID-19 infection: Origin, transmission, and characteristics of human coronaviruses

(2020) Muhammad Adnan Shereen et al.   Journal of Advanced Research

Network-based identification genetic effect of SARS-CoV-2 infections to Idiopathic pulmonary fibrosis (IPF) patients

(2020) Tasnimul Alam Taz et al.   BRIEFINGS IN BIOINFORMATICS

Detection of molecular signatures and pathways shared in inflammatory bowel disease and colorectal cancer: A bioinformatics and systems biology approach

(2020) Md. Al-Mustanjid et al.   GENOMICS

Recent progress and challenges in drug development against COVID-19 coronavirus (SARS-CoV-2) - an update on the status

(2020) Tarek Mohamed Abd El-Aziz et al.   INFECTION GENETICS AND EVOLUTION

Bioinformatics and system biology approach to identify the influences of COVID-19 on cardiovascular and hypertensive comorbidities

(2020) Asif Nashiry et al.   BRIEFINGS IN BIOINFORMATICS

Association of Angiotensin Modulators With the Course of Idiopathic Pulmonary Fibrosis

(2019) Michael Kreuter et al.   CHEST

Identification of molecular signatures and pathways to identify novel therapeutic targets in Alzheimer's disease: Insights from a systems biomedicine perspective

(2019) Md. Rezanur Rahman et al.   GENOMICS

Transcriptomic studies provide insights into the tumor suppressive role of miR-146a-5p in non-small cell lung cancer (NSCLC) cells

(2019) Joseph R. Iacona et al.   RNA Biology

Viral Infection Increases the Risk of Idiopathic Pulmonary Fibrosis

(2019) Gaohong Sheng et al.   CHEST

Curcumin and Cancer

(2019) Giordano et al.   Nutrients

Prediction of drug-target interaction based on protein features using undersampling and feature selection techniques with boosting

(2019) S.M. Hasan Mahmud et al.   ANALYTICAL BIOCHEMISTRY

Deguelin exerts anticancer activity of human gastric cancer MGC-803 and MKN-45 cells in vitro

(2018) Wen Kang et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

Interferon-Gamma-Mediated Osteoimmunology

(2018) Mengjia Tang et al.   Frontiers in Immunology

Transcriptome profiling reveals the complexity of pirfenidone effects in IPF

(2018) Grazyna Kwapiszewska et al.   EUROPEAN RESPIRATORY JOURNAL

The putative tumour suppressor miR-1-3p modulates prostate cancer cell aggressiveness by repressing E2F5 and PFTK1

(2018) Sen-Mao Li et al.   JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH

Comprehensive network map of interferon gamma signaling

(2018) Mohd Younis Bhat et al.   Journal of Cell Communication and Signaling

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Triclosan exposure, transformation, and human health effects

(2017) Lisa M. Weatherly et al.   JOURNAL OF TOXICOLOGY AND ENVIRONMENTAL HEALTH-PART B-CRITICAL REVIEWS

Pharmacological modulation of autophagy: therapeutic potential and persisting obstacles

(2017) Lorenzo Galluzzi et al.   NATURE REVIEWS DRUG DISCOVERY

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework

(2017) Aziz Khan et al.   NUCLEIC ACIDS RESEARCH

Deguelin, a Novel Anti-Tumorigenic Agent in Human Esophageal Squamous Cell Carcinoma

(2017) Yuh Baba et al.   EBioMedicine

MicroRNA-129 in Human Cancers: from Tumorigenesis to Clinical Treatment

(2016) Yanping Gao et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Identification of Differentially Expressed Genes in RNA-seq Data of Arabidopsis thaliana: A Compound Distribution Approach

(2016) Arfa Anjum et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Lung Microbiome, Immunity, and the Pathogenesis of Chronic Lung Disease

(2016) David N. O’Dwyer et al.   JOURNAL OF IMMUNOLOGY

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants

(2016) Janet Piñero et al.   NUCLEIC ACIDS RESEARCH

Expansion of the Gene Ontology knowledgebase and resources

(2016)   NUCLEIC ACIDS RESEARCH

miRNA-124 in Immune System and Immune Disorders

(2016) Zhen Qin et al.   Frontiers in Immunology

DSigDB: drug signatures database for gene set analysis: Fig. 1.

(2015) Minjae Yoo et al.   BIOINFORMATICS

NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data

(2015) Jianguo Xia et al.   Nature Protocols

Comprehensive Analysis of Transcriptome Sequencing Data in the Lung Tissues of COPD Subjects

(2015) Woo Jin Kim et al.   International Journal of Genomics

Sphingosine-1-phosphate induces pro-remodelling response in airway smooth muscle cells

(2014) E. Fuerst et al.   ALLERGY

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

cytoHubba: identifying hub objects and sub-networks from complex interactome

(2014) Chia-Hao Chin et al.   BMC Systems Biology

The Anticancer Drug Ellipticine Activated with Cytochrome P450 Mediates DNA Damage Determining Its Pharmacological Efficiencies: Studies with Rats, Hepatic Cytochrome P450 Reductase Null (HRN™) Mice and Pure Enzymes

(2014) Marie Stiborová et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome Analysis Reveals Differential Splicing Events in IPF Lung Tissue

(2014) Tracy Nance et al.   PLoS One

Hsa-miRNA-765 as a Key Mediator for Inhibiting Growth, Migration and Invasion in Fulvestrant-Treated Prostate Cancer

(2014) Yuet-Kin Leung et al.   PLoS One

The Oncogenic MicroRNA Hsa-miR-155-5p Targets the Transcription Factor ELK3 and Links It to the Hypoxia Response

(2014) E. Douglas Robertson et al.   PLoS One

Heterogeneous gene expression signatures correspond to distinct lung pathologies and biomarkers of disease severity in idiopathic pulmonary fibrosis

(2014) Daryle J DePianto et al.   THORAX

MicroRNA-34a: a potential therapeutic target in human cancer

(2014) X J Li et al.   Cell Death & Disease

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Gene expression profiles of alveolar type II cells of chronic obstructive pulmonary disease: a case–control study

(2012) Naoya Fujino et al.   BMJ Open

Circulating miR-142-3p levels in patients with systemic sclerosis

(2011) K. Makino et al.   CLINICAL AND EXPERIMENTAL DERMATOLOGY

miRTarBase: a database curates experimentally validated microRNA–target interactions

(2010) Sheng-Da Hsu et al.   NUCLEIC ACIDS RESEARCH

Targeting histone deacetylases for the treatment of disease

(2008) M. W. Lawless et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Idiopathic Pulmonary Fibrosis: Aberrant Recapitulation of Developmental Programs?

(2008) Moisés Selman et al.   PLOS MEDICINE

Gene Expression Profiling in Patients with Chronic Obstructive Pulmonary Disease and Lung Cancer

(2007) I-Ming Wang et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE