Genetic data and niche differences suggest that disjunct populations of Diglossa brunneiventris are not sister lineages

Systematics, biogeography, and diversification of Scytalopus tapaculos (Rhinocryptidae), an enigmatic radiation of Neotropical montane birds

(2020) Carlos Daniel Cadena et al.   AUK

Shallow genetic divergence and distinct phenotypic differences between two Andean hummingbirds: Speciation with gene flow?

(2019) Catalina Palacios et al.   AUK

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

On geographic barriers and Pleistocene glaciations: Tracing the diversification of the Russet-crowned Warbler (Myiothlypis coronata) along the Andes

(2018) David A. Prieto-Torres et al.   PLoS One

Biogeographic regions and events of isolation and diversification of the endemic biota of the tropical Andes

(2018) Nicolas A. Hazzi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Repeated divergent selection on pigmentation genes in a rapid finch radiation

(2017) Leonardo Campagna et al.   Science Advances

The dual role of Andean topography in primary divergence: functional and neutral variation among populations of the hummingbird, Metallura tyrianthina

(2016) Phred M. Benham et al.   BMC EVOLUTIONARY BIOLOGY

The gene cortex controls mimicry and crypsis in butterflies and moths

(2016) Nicola J. Nadeau et al.   NATURE

Distinguishing noise from signal in patterns of genomic divergence in a highly polymorphic avian radiation

(2015) Leonardo Campagna et al.   MOLECULAR ECOLOGY

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Molecular Phylogenetics and the Diversification of Hummingbirds

(2014) Jimmy A. McGuire et al.   CURRENT BIOLOGY

The influence of the complex topography and dynamic history of the montane Neotropics on the evolutionary differentiation of a cloud forest bird (Premnoplex brunnescens, Furnariidae)

(2014) Eugenio Valderrama et al.   JOURNAL OF BIOGEOGRAPHY

Biogeography of the Andean metaltail hummingbirds: contrasting evolutionary histories of tree line and habitat-generalist clades

(2014) Phred M. Benham et al.   JOURNAL OF BIOGEOGRAPHY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

The drivers of tropical speciation

(2014) Brian Tilston Smith et al.   NATURE

Genetic Differentiation, Niche Divergence, and the Origin and Maintenance of the Disjunct Distribution in the Blossomcrown Anthocephala floriceps (Trochilidae)

(2014) María Lozano-Jaramillo et al.   PLoS One

Ecological speciation along an elevational gradient in a tropical passerine bird?

(2013) L. M. Caro et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Quantifying the roles of ecology and geography in spatial genetic divergence

(2012) Ian J. Wang et al.   ECOLOGY LETTERS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Role of Mountain Ranges in the Diversification of Birds

(2011) Jon Fjeldså et al.   Annual Review of Ecology Evolution and Systematics

Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers

(2011) Heather R.L. Lerner et al.   CURRENT BIOLOGY

The crucial role of the accessible area in ecological niche modeling and species distribution modeling

(2011) Narayani Barve et al.   ECOLOGICAL MODELLING

Measuring ecological niche overlap from occurrence and spatial environmental data

(2011) Olivier Broennimann et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Rapid phenotypic evolution during incipient speciation in a continental avian radiation

(2011) L. Campagna et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

High levels of cryptic species diversity uncovered in Amazonian frogs

(2011) W. C. Funk et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Molecules, ecology, morphology, and songs in concert: how many species is Arremon torquatus (Aves: Emberizidae)?

(2009) CARLOS DANIEL CADENA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogeny, biogeography, and recurrent evolution of divergent bill types in the nectar-stealing flowerpiercers (Thraupini: Diglossa and Diglossopis)

(2009) WILLIAM M. MAUCK III et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The causes of mitochondrial DNA gene tree paraphyly in birds

(2009) Bailey D. McKay et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Niches and distributional areas: Concepts, methods, and assumptions

(2009) J. Soberon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

Calibrating the avian molecular clock

(2008) J. T. WEIR et al.   MOLECULAR ECOLOGY