The influence of the complex topography and dynamic history of the montane Neotropics on the evolutionary differentiation of a cloud forest bird (Premnoplex brunnescens, Furnariidae)

Phylogeny and Classification ofAutomolusFoliage-gleaners and Allies (Furnariidae)

(2013) Santiago Claramunt et al.   CONDOR

The role of glacial cycles in promoting genetic diversity in the Neotropics: the case of cloud forests during the Last Glacial Maximum

(2013) Santiago Ramírez-Barahona et al.   Ecology and Evolution

An Integrative Approach to Species-Level Systematics Reveals the Depth of Diversification in an Andean Thamnophilid, the Long-tailed Antbird

(2012)   CONDOR

Arc-continent collision and orocline formation: Closing of the Central American seaway

(2012) Camilo Montes et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The influence of the arid Andean high plateau on the phylogeography and population genetics of guanaco (Lama guanicoe) in South America

(2012) Juan C. Marin et al.   MOLECULAR ECOLOGY

Non-monophyly and deep genetic differentiation across low-elevation barriers in a Neotropical montane bird (Basileuterus tristriatus; Aves: Parulidae)

(2012) Natalia Gutiérrez-Pinto et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography of an Atlantic forest passerine reveals demographic stability through the last glacial maximum

(2012) Henrique Batalha-Filho et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

The AndeanHapalopsittacaparrots (Psittacidae, Aves): an example of montane-tropical lowland vicariance

(2012) ESTHER QUINTERO et al.   ZOOLOGICA SCRIPTA

LINEAGE DIVERSIFICATION AND MORPHOLOGICAL EVOLUTION IN A LARGE-SCALE CONTINENTAL RADIATION: THE NEOTROPICAL OVENBIRDS AND WOODCREEPERS (AVES: FURNARIIDAE)

(2011) Elizabeth P. Derryberry et al.   EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genetic effects of Late Quaternary climatic changes over a tropical latitudinal gradient: diversification of an Atlantic Forest passerine

(2011) FERNANDO M. D’HORTA et al.   MOLECULAR ECOLOGY

Diversification in Adelomyia hummingbirds follows Andean uplift

(2011) JAIME A. CHAVES et al.   MOLECULAR ECOLOGY

Andean uplift promotes lowland speciation through vicariance and dispersal in Dendrocincla woodcreepers

(2011) JASON T. WEIR et al.   MOLECULAR ECOLOGY

Multiple lines of evidence for demographic and range expansion of a temperate species (Hyla sarda) during the last glaciation

(2011) ROBERTA BISCONTI et al.   MOLECULAR ECOLOGY

No population genetic structure in a widespread aquatic songbird from the Neotropics

(2011) Carlos Daniel Cadena et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Latitude, elevational climatic zonation and speciation in New World vertebrates

(2011) C. D. Cadena et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Response of Vegetation on the Andean Flank in Western Amazonia to Pleistocene Climate Change

(2011) M. L. Cardenas et al.   SCIENCE

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

DensiTree: making sense of sets of phylogenetic trees

(2010) R. R. Bouckaert   BIOINFORMATICS

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Phylogenetic Relationships of the White-Throated Barbtail,Premnoplex tatei(Furnariidae), an Endemic of the Northeastern Mountain Range of Venezuela

(2010) Jorge L. Pérez-Emán et al.   CONDOR

Chapter 8: Phylogeography and Adaptive Plumage Evolution in Central American Subspecies of the Slate-Throated Redstart (Myioborus Miniatus)

(2010) Jorge L. Pérez-Emán et al.   ORNITHOLOGICAL MONOGRAPHS

Amazonia Through Time: Andean Uplift, Climate Change, Landscape Evolution, and Biodiversity

(2010) C. Hoorn et al.   SCIENCE

Ecology Predicts Levels of Genetic Differentiation in Neotropical Birds

(2009) Curtis W. Burney et al.   AMERICAN NATURALIST

IMPLICATIONS OF GENETIC DIFFERENTIATION IN NEOTROPICAL MONTANE FOREST BIRDS1

(2009) Jason T. Weir   ANNALS OF THE MISSOURI BOTANICAL GARDEN

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Molecules, ecology, morphology, and songs in concert: how many species is Arremon torquatus (Aves: Emberizidae)?

(2009) CARLOS DANIEL CADENA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeographic and demographic effects of Pleistocene climatic fluctuations in a montane salamander,Plethodon fourchensis

(2009) DONALD B. SHEPARD et al.   MOLECULAR ECOLOGY

Molecular phylogeny and biogeography of the eastern Tapaculos (Aves: Rhinocryptidae: Scytalopus, Eleoscytalopus): Cryptic diversification in Brazilian Atlantic Forest

(2009) Helena Mata et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Paraphyly of Cinclodes fuscus (Aves: Passeriformes: Furnariidae): Implications for taxonomy and biogeography

(2009) Camilo Sanín et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogenetics of the hummingbird genus Coeligena

(2009) Juan Luis Parra et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Tracing the impact of the Andean uplift on Neotropical plant evolution

(2009) A. Antonelli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Great American Biotic Interchange in birds

(2009) J. T. Weir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Experimental evidence for extreme dispersal limitation in tropical forest birds

(2008) R. P. Moore et al.   ECOLOGY LETTERS

Pleistocene climatic cycling and diversification of the Andean treefrog,Hypsiboas andinus

(2008) DARIA KOSCINSKI et al.   MOLECULAR ECOLOGY

The relative roles of vicariance versus elevational gradients in the genetic differentiation of the high Andean tree frog, Dendropsophus labialis

(2008) Carlos E. Guarnizo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION