Soil Bacterial Communities and Diversity in Alpine Grasslands on the Tibetan Plateau Based on 16S rRNA Gene Sequencing

The Response of Soil Bacterial Communities and Nitrogen Cycling to Subalpine Meadow Degradation on the Loess Plateau, China

(2020) Zhengming Luo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Greenhouse gas emissions and soil bacterial community as affected by biochar amendments after periodic mineral fertilizer applications

(2020) Vicky Lévesque et al.   BIOLOGY AND FERTILITY OF SOILS

Contrasting patterns and drivers of soil bacterial and fungal diversity across a mountain gradient

(2020) Congcong Shen et al.   ENVIRONMENTAL MICROBIOLOGY

Interannual climate variability and altered precipitation influence the soil microbial community structure in a Tibetan Plateau grassland

(2020) Yu Shi et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Warming and increased precipitation indirectly affect the composition and turnover of labile-fraction soil organic matter by directly affecting vegetation and microorganisms

(2020) Qiuyu Chen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Using soil bacterial communities to predict physico-chemical variables and soil quality

(2020) Syrie M. Hermans et al.   Microbiome

Methods and approaches to advance soil macroecology

(2020) Hannah J. White et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Habitat-specific environmental factors regulate spatial variability of soil bacterial communities in biocrusts across northern China's drylands

(2020) Yan-gui Su et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Biogeography and emerging significance of Actinobacteria in Australia and Northern Antarctica soils

(2020) Ricardo Araujo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands

(2020) Jeroen H. T. Zethof et al.   Frontiers in Environmental Science

Drought stress induced increase of fungi:bacteria ratio in a poplar plantation

(2020) Yuan Sun et al.   CATENA

Relationships between nitrogen cycling microbial community abundance and composition reveal the indirect effect of soil pH on oak decline

(2020) K. Scarlett et al.   ISME Journal

Climate–land-use interactions shape tropical mountain biodiversity and ecosystem functions

(2019) Marcell K. Peters et al.   NATURE

Temperature and soil moisture control microbial community composition in an arctic–alpine ecosystem along elevational and micro-topographic gradients

(2019) K. Frindte et al.   ISME Journal

How do soil micro‐organisms respond to N, P and NP additions? Application of the ecological framework of (co‐)limitation by multiple resources

(2019) Beibei Ma et al.   JOURNAL OF ECOLOGY

Climatic controls of decomposition drive the global biogeography of forest-tree symbioses

(2019) B. S. Steidinger et al.   NATURE

The Soil Microbiome of GLORIA Mountain Summits in the Swiss Alps

(2019) Magdalene Adamczyk et al.   Frontiers in Microbiology

Mediterranean grassland soil C–N compound turnover is dependent on rainfall and depth, and is mediated by genomically divergent microorganisms

(2019) Spencer Diamond et al.   Nature Microbiology

Plant and soil’s δ15N are regulated by climate, soil nutrients, and species diversity in alpine grasslands on the northern Tibetan Plateau

(2019) Jianshuang Wu et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Effects of grazing exclusion on soil carbon dynamics in alpine grasslands of the Tibetan Plateau

(2019) Lingfei Yu et al.   GEODERMA

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Detection and cell sorting of Pseudonocardia species by fluorescence in situ hybridization and flow cytometry using 16S rRNA-targeted oligonucleotide probes

(2018) Mengyan Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits

(2018) Jonathan W. Leff et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential responses of soil microbial biomass, diversity, and compositions to altitudinal gradients depend on plant and soil characteristics

(2018) Chengjie Ren et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Defoliation intensity and elevated precipitation effects on microbiome and interactome depend on site type in northern mixed-grass prairie

(2018) Bin Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Litter amendment rather than phosphorus can dramatically change inorganic nitrogen pools in a degraded grassland soil by affecting nitrogen-cycling microbes

(2018) Rongxiao Che et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial diversity and biogeography in Arctic soils

(2018) Lucie A Malard et al.   Environmental Microbiology Reports

Structure and function of the global topsoil microbiome

(2018) Mohammad Bahram et al.   NATURE

Contrasting Soil Bacterial Community, Diversity, and Function in Two Forests in China

(2018) Hua Wei et al.   Frontiers in Microbiology

Assessment of abundance and diversity of exoelectrogenic bacteria in soil under different land use types

(2018) Jun Wang et al.   CATENA

Composition and Genetic Diversity of the Nicotiana tabacum Microbiome in Different Topographic Areas and Growth Periods

(2018) Xiao-Long Yuan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Grazing practices affect the soil microbial community composition in a Tibetan alpine meadow

(2018) Fei Yang et al.   LAND DEGRADATION & DEVELOPMENT

The biology of fog: results from coastal Maine and Namib Desert reveal common drivers of fog microbial composition

(2018) Sarah E. Evans et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Tree species identity surpasses richness in affecting soil microbial richness and community composition in subtropical forests

(2018) Liang Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Carbon and nitrogen inputs differentially affect priming of soil organic matter in tropical lowland and montane soils

(2018) Lettice C. Hicks et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in the soil microbial communities of alpine steppe at Qinghai-Tibetan Plateau under different degradation levels

(2018) Heng Zhou et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diversity patterns of the rhizosphere and bulk soil microbial communities along an altitudinal gradient in an alpine ecosystem of the eastern Tibetan Plateau

(2018) Yongxing Cui et al.   GEODERMA

Land use in mountain grasslands alters drought response and recovery of carbon allocation and plant-microbial interactions

(2017) Stefan Karlowsky et al.   JOURNAL OF ECOLOGY

Plant traits, stoichiometry and microbes as drivers of decomposition in the rhizosphere in a temperate grassland

(2017) Yolima Carrillo et al.   JOURNAL OF ECOLOGY

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Vertical patterns and controls of soil nutrients in alpine grassland: Implications for nutrient uptake

(2017) Liming Tian et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Soil bacterial and fungal diversity differently correlated with soil biochemistry in alpine grassland ecosystems in response to environmental changes

(2017) Yong Zhang et al.   Scientific Reports

Bacteria as emerging indicators of soil condition

(2016) Syrie M. Hermans et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of the fecal microbiota of dholes high-throughput Illumina sequencing of the V3–V4 region of the 16S rRNA gene

(2016) Xiaoyang Wu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bacterial community dissimilarity between the surface and subsurface soils equals horizontal differences over several kilometers in the western Tibetan Plateau

(2016) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

Potential sources of microbial colonizers in an initial soil ecosystem after retreat of an alpine glacier

(2016) Thomas Rime et al.   ISME Journal

Patterns and drivers of soil microbial communities in Tibetan alpine and global terrestrial ecosystems

(2016) Yong-Liang Chen et al.   JOURNAL OF BIOGEOGRAPHY

Rare actinomycetes Nocardia caishijiensis and Pseudonocardia carboxydivorans as endophytes, their bioactivity and metabolites evaluation

(2016) Rabia Tanvir et al.   MICROBIOLOGICAL RESEARCH

Climate change and human activities altered the diversity and composition of soil microbial community in alpine grasslands of the Qinghai-Tibetan Plateau

(2016) Yong Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Increases in mean annual temperature do not alter soil bacterial community structure in tropical montane wet forests

(2016) Paul C. Selmants et al.   Ecosphere

Effects of Short-Term Warming and Altered Precipitation on Soil Microbial Communities in Alpine Grassland of the Tibetan Plateau

(2016) Kaoping Zhang et al.   Frontiers in Microbiology

Microbial communities and primary succession in high altitude mountain environments

(2015) Sonia Ciccazzo et al.   ANNALS OF MICROBIOLOGY

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

(2015) Liyou Wu et al.   BMC MICROBIOLOGY

Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes

(2015) Haïtham Sghaier et al.   ISME Journal

Taxonomy, Physiology, and Natural Products of Actinobacteria

(2015) Essaid Ait Barka et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Evidence for the presence of key chlorophyll-biosynthesis-related proteins in the genus Rubrobacter (Phylum Actinobacteria) and its implications for the evolution and origin of photosynthesis

(2015) Radhey S. Gupta et al.   PHOTOSYNTHESIS RESEARCH

Carbon, nitrogen, and phosphorus storage in alpine grassland ecosystems of Tibet: effects of grazing exclusion

(2015) Xuyang Lu et al.   Ecology and Evolution

Plant phenological responses to climate change on the Tibetan Plateau: research status and challenges

(2015) Miaogen Shen et al.   National Science Review

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

(2014) Albert Barberán et al.   ECOLOGY LETTERS

Soil microbial community structure and activity along a montane elevational gradient on the Tibetan Plateau

(2014) Meng Xu et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

An environmental bacterial taxon with a large and distinct metabolic repertoire

(2014) Micheal C. Wilson et al.   NATURE

Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally

(2014) K. S. Ramirez et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The impacts of climate change and human activities on biogeochemical cycles on the Qinghai-Tibetan Plateau

(2013) Huai Chen et al.   GLOBAL CHANGE BIOLOGY

FLASH assembly of TALENs for high-throughput genome editing

(2012) Deepak Reyon et al.   NATURE BIOTECHNOLOGY

Global Biogeography and Quantitative Seasonal Dynamics of Gemmatimonadetes in Soil

(2011) Jennifer M. DeBruyn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

(2010) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The effects of mineral fertilizer and organic manure on soil microbial community and diversity

(2009) Wenhui Zhong et al.   PLANT AND SOIL