Contrasting Soil Bacterial Community, Diversity, and Function in Two Forests in China

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

(2017) Salvador Lladó et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Structure and Function of the Fecal Microbiota in Diarrheic Neonatal Piglets

(2017) Qiaoli Yang et al.   Frontiers in Microbiology

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

(2017) Lucia Žifčáková et al.   Microbiome

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform

(2017) Chongqing Wen et al.   PLoS One

Bacterial community diversity on in-shell walnut surfaces from six representative provinces in China

(2017) Lihui Zhang et al.   Scientific Reports

Residue management leading to higher field-scale N 2 O flux is associated with different soil bacterial nitrifier and denitrifier gene community structures

(2016) Elizabeth Bent et al.   APPLIED SOIL ECOLOGY

Variations in bacterial communities during foliar litter decomposition in the winter and growing seasons in an alpine forest of the eastern Tibetan Plateau

(2016) Yeyi Zhao et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Phosphorus depletion in forest soils shapes bacterial communities towards phosphorus recycling systems

(2016) Fabian Bergkemper et al.   ENVIRONMENTAL MICROBIOLOGY

Biochar alters the soil microbiome and soil function: results of next-generation amplicon sequencing across Europe

(2016) Joseph R. Jenkins et al.   Global Change Biology Bioenergy

Altitudinal patterns of leaf stoichiometry and nutrient resorption in Quercus variabilis in the Baotianman Mountains, China

(2016) Baoming Du et al.   PLANT AND SOIL

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

Biogeographic Distribution Patterns of Bacteria in Typical Chinese Forest Soils

(2016) Zongwei Xia et al.   Frontiers in Microbiology

Intestinal Microbiota in Patients with Spinal Cord Injury

(2016) Bilgi Gungor et al.   PLoS One

Elevated microbial CO 2 production and fixation in the oxic/anoxic interface of estuarine water columns during seasonal anoxia

(2015) Dong Y. Lee et al.   ESTUARINE COASTAL AND SHELF SCIENCE

Contrasting soil bacterial community structure between the phyla Acidobacteria and Proteobacteria in tropical Southeast Asian and temperate Japanese forests

(2015) Naohiko T. Miyashita   GENES & GENETIC SYSTEMS

Redistribution of soil water by a saprotrophic fungus enhances carbon mineralization

(2015) Alexander Guhr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe

(2015) Jonathan W. Leff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession

(2015) Jing Cong et al.   Scientific Reports

Leaf-litter-associated fungi and bacteria along temporal and environmental gradients in boreal streams

(2014) J Bergfur et al.   AQUATIC MICROBIAL ECOLOGY

Nitrous oxide fluxes from three forest types of the tropical mountain rainforests on Hainan Island, China

(2014) Zhenzhi Bai et al.   ATMOSPHERIC ENVIRONMENT

Different effects of warming and cooling on the decomposition of soil organic matter in warm–temperate oak forests: a reciprocal translocation experiment

(2014) Junwei Luan et al.   BIOGEOCHEMISTRY

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

(2014) Pier Luigi Buttigieg et al.   FEMS MICROBIOLOGY ECOLOGY

Denitrification versus respiratory ammonification: environmental controls of two competing dissimilatory NO3−/NO2− reduction pathways in Shewanella loihica strain PV-4

(2014) Sukhwan Yoon et al.   ISME Journal

Change in deep soil microbial communities due to long-term fertilization

(2014) Chenhua Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of fertilization regimes on tea yields, soil fertility, and soil microbial diversity

(2014) Shan-Lian Qiu et al.   Chilean Journal of Agricultural Research

Microbial regulation of global biogeochemical cycles

(2014) Johannes Rousk et al.   Frontiers in Microbiology

Bacterial diversity and community structure along different peat soils in boreal forest

(2013) Hui Sun et al.   APPLIED SOIL ECOLOGY

Effects of soil chemical characteristics and water regime on denitrification genes (nirS, nirK, and nosZ) abundances in a created riverine wetland complex

(2013) Teele Ligi et al.   ECOLOGICAL ENGINEERING

Variation in soil respiration under the tree canopy in a temperate mixed forest, central China, under different soil water conditions

(2013) Yanchun Liu et al.   ECOLOGICAL RESEARCH

Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring

(2013) Christian G Klatt et al.   ISME Journal

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River

(2013) C. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Interactive Effects of Nitrogen and Phosphorus on Soil Microbial Communities in a Tropical Forest

(2013) Lei Liu et al.   PLoS One

The vegetation history of Qinling Mountains, China

(2013) Xiangui Zhao et al.   QUATERNARY INTERNATIONAL

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

(2013) N. Fierer et al.   SCIENCE

Environmental Factors Affect Acidobacterial Communities below the Subgroup Level in Grassland and Forest Soils

(2012) Astrid Naether et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing Analysis of Bacterial Diversity in 14 Wastewater Treatment Systems in China

(2012) Xiaohui Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial community structure and its relationship to soil physico-chemical characteristics in alder stands with different management histories

(2012) Jens-Konrad Preem et al.   ECOLOGICAL ENGINEERING

Gemini: A grassland model simulating the role of plant traits for community dynamics and ecosystem functioning. Parameterization and evaluation

(2012) Jean-François Soussana et al.   ECOLOGICAL MODELLING

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments

(2011) Gareth K. Phoenix et al.   GLOBAL CHANGE BIOLOGY

Soil moisture is the major factor influencing microbial community structure and enzyme activities across seven biogeoclimatic zones in western Canada

(2011) Beth F.T. Brockett et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

(2010) Haiyan Chu et al.   ENVIRONMENTAL MICROBIOLOGY

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

(2010) Barbara J. Campbell et al.   ENVIRONMENTAL MICROBIOLOGY

Change in Bacterial Community Structure in Response to Disturbance of Natural Hardwood and Secondary Coniferous Forest Soils in Central Taiwan

(2010) Yu-Te Lin et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Biomass and carbon dynamics of a tropical mountain rain forest in China

(2010) DeXiang Chen et al.   Science China-Life Sciences

Plot-scale manipulations of organic matter inputs to soils correlate with shifts in microbial community composition in a lowland tropical rain forest

(2010) Diana R. Nemergut et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizospheric and heterotrophic respiration of a warm-temperate oak chronosequence in China

(2010) Junwei Luan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil bacterial community structure and physicochemical properties in mitigation wetlands created in the Piedmont region of Virginia (USA)

(2009) Changwoo Ahn et al.   ECOLOGICAL ENGINEERING

Ammonia-oxidizing communities in a highly aerated full-scale activated sludge bioreactor: betaproteobacterial dynamics and low relative abundance of Crenarchaea

(2009) George F. Wells et al.   ENVIRONMENTAL MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Plant biomass, soil water content and soil N:P ratio regulating soil microbial functional diversity in a temperate steppe: A regional scale study

(2009) Zhanfeng Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbiological and biochemical properties for assessing the effect of agricultural management practices in Estonian cultivated soils

(2008) Marika Truu et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Microbial contributions to climate change through carbon cycle feedbacks

(2008) Richard D Bardgett et al.   ISME Journal

Assessing bacterial diversity in soil

(2008) Li Zhang et al.   JOURNAL OF SOILS AND SEDIMENTS

Managing Forests for Climate Change Mitigation

(2008) J. G. Canadell et al.   SCIENCE

Impact of wheat straw decomposition on successional patterns of soil microbial community structure

(2008) Fabiola Bastian et al.   SOIL BIOLOGY & BIOCHEMISTRY