Population Transcriptomics Reveals Gene Flow and Introgression Between Two Non-sister Alpine Gentians

Allopatric divergence and hybridization within Cupressus chengiana (Cupressaceae), a threatened conifer in the northern Hengduan Mountains of western China

(2020) Jialiang Li et al.   MOLECULAR ECOLOGY

Phylotranscriptomics reveals extensive gene duplication in the subtribe Gentianinae (Gentianaceae)

(2020) Chun‐Lin Chen et al.   Journal of Systematics and Evolution

Implications for evolutionary trends from the pairing frequencies among golden‐winged and blue‐winged warblers and their hybrids

(2020) John L. Confer et al.   Ecology and Evolution

Mountains as Evolutionary Arenas: Patterns, Emerging Approaches, Paradigm Shifts, and Their Implications for Plant Phylogeographic Research in the Tibeto-Himalayan Region

(2019) Alexandra N. Muellner-Riehl   Frontiers in Plant Science

The flickering connectivity system of the north Andean páramos

(2019) Suzette G.A. Flantua et al.   JOURNAL OF BIOGEOGRAPHY

Genomic insight into the ‘Sky Islands’ species diversification in a mountainous biodiversity hotspot

(2019) Dan Zhang et al.   Journal of Systematics and Evolution

Shifts in plant distributions in response to climate warming in a biodiversity hotspot, the Hengduan Mountains

(2018) Qianlong Liang et al.   JOURNAL OF BIOGEOGRAPHY

Analyses of genome-scale variation reveal divergence of two Sinalliaria species (Brassicaceae) with continuous but limited gene flow

(2018) Tian-Jing Wang et al.   Journal of Systematics and Evolution

Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process

(2018) Dafu Ru et al.   MOLECULAR ECOLOGY

Hybridization and extinction

(2016) Marco Todesco et al.   Evolutionary Applications

Revisiting a classic case of introgression: hybridization and gene flow in Californian sunflowers

(2016) Gregory L. Owens et al.   MOLECULAR ECOLOGY

Genomic and functional approaches reveal a case of adaptive introgression fromPopulus balsamifera(balsam poplar) inP. trichocarpa(black cottonwood)

(2016) Adriana Suarez-Gonzalez et al.   MOLECULAR ECOLOGY

Pollinator sharing and gene flow among closely related sympatric dioecious fig taxa

(2016) Gang Wang et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genetic homogenization of the nuclear ITS loci across two morphologically distinct gentians in their overlapping distributions in the Qinghai-Tibet Plateau

(2016) Quanjun Hu et al.   Scientific Reports

Initial diversification, glacial survival, and continuous range expansion of Gentiana straminea (Gentianaceae) in the Qinghai–Tibet Plateau

(2015) Zhiqiang Lu et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Individualistic response to past climate changes: niche differentiation promotes diverging Quaternary range dynamics in the subspecies ofTestudo graeca

(2015) J. D. Anadón et al.   ECOGRAPHY

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

(2014) Emilia Huerta-Sánchez et al.   NATURE

Evolutionary history and underlying adaptation of alpine plants on the Qinghai-Tibet Plateau

(2014) Jian-Quan LIU et al.   Journal of Systematics and Evolution

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Adaptive Introgression across Species Boundaries in Heliconius Butterflies

(2012) Carolina Pardo-Diaz et al.   PLoS Genetics

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios

(2011) Laurent Excoffier et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS