Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process
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Title
Population genomic analysis reveals that homoploid hybrid speciation can be a lengthy process
Authors
Keywords
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Journal
MOLECULAR ECOLOGY
Volume 27, Issue 23, Pages 4875-4887
Publisher
Wiley
Online
2018-10-25
DOI
10.1111/mec.14909
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Note: Only part of the references are listed.- Is homoploid hybrid speciation that rare? An empiricist’s view
- (2017) G Nieto Feliner et al. HEREDITY
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- (2016) Dafu Ru et al. MOLECULAR ECOLOGY
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- (2016) Adriana Suarez-Gonzalez et al. MOLECULAR ECOLOGY
- A genomic history of Aboriginal Australia
- (2016) Anna-Sapfo Malaspinas et al. NATURE
- Genome-culture coevolution promotes rapid divergence of killer whale ecotypes
- (2016) Andrew D. Foote et al. Nature Communications
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Paleoaltimetry reconstructions of the Tibetan Plateau: progress and contradictions
- (2015) Tao Deng et al. National Science Review
- Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
- (2015) Nicolas Delhomme et al. PLoS One
- The role of homoploid hybridization in evolution: A century of studies synthesizing genetics and ecology
- (2014) S. B. Yakimowski et al. AMERICAN JOURNAL OF BOTANY
- ngsTools: methods for population genetics analyses from next-generation sequencing data
- (2014) Matteo Fumagalli et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- HOW COMMON IS HOMOPLOID HYBRID SPECIATION?
- (2014) Molly Schumer et al. EVOLUTION
- Distributional dynamics and interspecific gene flow inPicea likiangensisandP. wilsoniitriggered by climate change on the Qinghai-Tibet Plateau
- (2014) Yongshuai Sun et al. JOURNAL OF BIOGEOGRAPHY
- Pliocene intraspecific divergence and Plio-Pleistocene range expansions withinPicea likiangensis(Lijiang spruce), a dominant forest tree of the Qinghai-Tibet Plateau
- (2014) Long Li et al. MOLECULAR ECOLOGY
- Origin and speciation of Picea schrenkiana and Picea smithiana in the Center Asian Highlands and Himalayas
- (2014) Lili Li et al. PLANT MOLECULAR BIOLOGY REPORTER
- Maximum likelihood inference of reticulate evolutionary histories
- (2014) Yun Yu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication
- (2014) Mingzhou Li et al. Scientific Reports
- Population genetic evidence for speciation pattern and gene flow between Picea wilsonii, P. morrisonicola and P. neoveitchii
- (2013) Jiabin Zou et al. ANNALS OF BOTANY
- Hybridization and speciation
- (2013) R. Abbott et al. JOURNAL OF EVOLUTIONARY BIOLOGY
- Genomic Divergence during Speciation Driven by Adaptation to Altitude
- (2013) Mark A. Chapman et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Evolutionary history of Purple cone spruce (Picea purpurea) in the Qinghai-Tibet Plateau: homoploid hybrid origin and Pleistocene expansion
- (2013) Yongshuai Sun et al. MOLECULAR ECOLOGY
- A new phylogeny for the genus Picea from plastid, mitochondrial, and nuclear sequences
- (2013) Jared D. Lockwood et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The Norway spruce genome sequence and conifer genome evolution
- (2013) Björn Nystedt et al. NATURE
- Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars
- (2013) Mingzhou Li et al. NATURE GENETICS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- The genomics of selection in dogs and the parallel evolution between dogs and humans
- (2013) Guo-dong Wang et al. Nature Communications
- Genomic islands of divergence are not affected by geography of speciation in sunflowers
- (2013) S. Renaut et al. Nature Communications
- Robust Demographic Inference from Genomic and SNP Data
- (2013) Laurent Excoffier et al. PLoS Genetics
- HYBRID SPECIATION AND INDEPENDENT EVOLUTION IN LINEAGES OF ALPINE BUTTERFLIES
- (2012) Chris C. Nice et al. EVOLUTION
- Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
- (2012) Kanchon K. Dasmahapatra et al. NATURE
- Distinct Niche Divergence Characterizes the Homoploid Hybrid Speciation of Pinus densata on the Tibetan Plateau
- (2011) Jian-Feng Mao et al. AMERICAN NATURALIST
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
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- (2011) David H Alexander et al. BMC BIOINFORMATICS
- Synthetic spike-in standards for RNA-seq experiments
- (2011) L. Jiang et al. GENOME RESEARCH
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Direction and extent of organelle DNA introgression between two spruce species in the Qinghai-Tibetan Plateau
- (2011) Fang K. Du et al. NEW PHYTOLOGIST
- CD-HIT Suite: a web server for clustering and comparing biological sequences
- (2010) Ying Huang et al. BIOINFORMATICS
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- (2010) Kasper D. Hansen et al. NUCLEIC ACIDS RESEARCH
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- (2010) Camilo Salazar et al. PLoS Genetics
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
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- (2009) Rémy J. Petit et al. TRENDS IN ECOLOGY & EVOLUTION
- PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships
- (2008) Cuong Than et al. BMC BIOINFORMATICS
- Alta-Cyclic: a self-optimizing base caller for next-generation sequencing
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