Genomic and Phenotypic Analysis of Multidrug-Resistant Acinetobacter baumannii Clinical Isolates Carrying Different Types of CRISPR/Cas Systems

Endogenous Type I CRISPR-Cas: From Foreign DNA Defense to Prokaryotic Engineering

(2020) Yanli Zheng et al.   Frontiers in Bioengineering and Biotechnology

Identification of Acinetobacter baumannii loci for capsular polysaccharide (KL) and lipooligosaccharide outer core (OCL) synthesis in genome assemblies using curated reference databases compatible with Kaptive

(2020) Kelly L. Wyres et al.   Microbial Genomics

Genotyping of Campylobacter jejuni Isolates from Poultry by Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)

(2020) Hung-Yueh Yeh et al.   CURRENT MICROBIOLOGY

DNA interference is controlled by R-loop length in a type I-F1 CRISPR-Cas system

(2020) Donata Tuminauskaite et al.   BMC BIOLOGY

Molecular Typing, Characterization of Antimicrobial Resistance, Virulence Profiling and Analysis of Whole-Genome Sequence of Clinical Klebsiella pneumoniae Isolates

(2020) Andrey Shelenkov et al.   Antibiotics-Basel

Prophage Hunter: an integrative hunting tool for active prophages

(2019) Wenchen Song et al.   NUCLEIC ACIDS RESEARCH

Characterization of a small plasmid carrying the carbapenem resistance gene blaOXA-72 from community-acquired Acinetobacter baumannii sequence type 880 in China

(2019) Huiqiong Jia et al.   Infection and Drug Resistance

Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures

(2019) Alexander S. Shashkov et al.   CARBOHYDRATE RESEARCH

CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers

(2019) Christine Pourcel et al.   NUCLEIC ACIDS RESEARCH

Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclusive genes for biofilm formation

(2019) Eugenio L. Mangas et al.   Microbial Genomics

Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants

(2019) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Structure and gene cluster of the K125 capsular polysaccharide from Acinetobacter baumannii MAR13-1452

(2018) Nikolay P. Arbatsky et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

(2018) Martin Raden et al.   NUCLEIC ACIDS RESEARCH

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

(2018) David Couvin et al.   NUCLEIC ACIDS RESEARCH

Characterization of CRISPR-Cas Systems in Clinical Klebsiella pneumoniae Isolates Uncovers Its Potential Association With Antibiotic Susceptibility

(2018) Hsin-Yu Li et al.   Frontiers in Microbiology

Implementing an infection control and prevention program decreases the incidence of healthcare-associated infections and antibiotic resistance in a Russian neuro-ICU

(2018) Ksenia Ershova et al.   Antimicrobial Resistance and Infection Control

Presence of Type I-F CRISPR/Cas systems is associated with antimicrobial susceptibility in Escherichia coli

(2017) Seyid Aydin et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Structural Variation of Type I-F CRISPR RNA Guided DNA Surveillance

(2017) Patrick Pausch et al.   MOLECULAR CELL

Cas1 and the Csy complex are opposing regulators of Cas2/3 nuclease activity

(2017) MaryClare F. Rollins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Spacer capture and integration by a type I-F Cas1–Cas2-3 CRISPR adaptation complex

(2017) Robert D. Fagerlund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-Resolution Analysis by Whole-Genome Sequencing of an International Lineage (Sequence Type 111) of Pseudomonas aeruginosa Associated with Metallo-Carbapenemases in the United Kingdom

(2015) Jane F. Turton et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Phylogenetic Distribution of CRISPR-Cas Systems in Antibiotic-Resistant Pseudomonas aeruginosa

(2015) Alex van Belkum et al.   mBio

CRISPR-cas Subtype I-Fb in Acinetobacter baumannii: Evolution and Utilization for Strain Subtyping

(2015) Nabil Karah et al.   PLoS One

The Resistome of Pseudomonas aeruginosa in Relationship to Phenotypic Susceptibility

(2014) Veronica N. Kos et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

(2014) Omer S. Alkhnbashi et al.   BIOINFORMATICS

CRISPR–Cas systems: beyond adaptive immunity

(2014) Edze R. Westra et al.   NATURE REVIEWS MICROBIOLOGY

CRISPRs: Molecular Signatures Used for Pathogen Subtyping

(2013) Nikki Shariat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Arrangement and number of clustered regularly interspaced short palindromic repeat spacers are associated with erythromycin susceptibility in emm12, emm75 and emm 92 of group A streptococcus

(2013) P.-X. Zheng et al.   CLINICAL MICROBIOLOGY AND INFECTION

CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems

(2013) Sita J. Lange et al.   NUCLEIC ACIDS RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Correction: CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections

(2012) Laëtitia Fabre et al.   PLoS One

PER-7, an Extended-Spectrum β-Lactamase with Increased Activity toward Broad-Spectrum Cephalosporins in Acinetobacter baumannii

(2011) Rémy A. Bonnin et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genome organization of epidemic Acinetobacter baumannii strains

(2011) Pier Di Nocera et al.   BMC MICROBIOLOGY

The Population Structure of Acinetobacter baumannii: Expanding Multiresistant Clones from an Ancestral Susceptible Genetic Pool

(2010) Laure Diancourt et al.   PLoS One

Multidrug-Resistant Enterococci Lack CRISPR-cas

(2010) K. L. Palmer et al.   mBio

Diversity, Epidemiology, and Genetics of Class D  -Lactamases

(2009) L. Poirel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Search of regular sequences in promoters from eukaryotic genomes

(2009) Andrew Shelenkov et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Carbapenem resistance in Acinetobacter baumannii: the molecular epidemic features of an emerging problem in health care facilities

(2009) Raffaele Zarrilli et al.   Journal of Infection in Developing Countries

Acinetobacter Infection

(2008) L. Silvia Munoz-Price et al.   NEW ENGLAND JOURNAL OF MEDICINE

MMsat—a database of potential micro- and minisatellites

(2007) Andrew Shelenkov et al.   GENE