Identification of Acinetobacter baumannii loci for capsular polysaccharide (KL) and lipooligosaccharide outer core (OCL) synthesis in genome assemblies using curated reference databases compatible with Kaptive

Rapid Replacement of Acinetobacter baumannii Strains Accompanied by Changes in Lipooligosaccharide Loci and Resistance Gene Repertoire

(2019) Mark D. Adams et al.   mBio

The K46 and K5 capsular polysaccharides produced by Acinetobacter baumannii NIPH 329 and SDF have related structures and the side-chain non-ulosonic acids are 4-O-acetylated by phage-encoded O-acetyltransferases

(2019) Johanna J. Kenyon et al.   PLoS One

Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures

(2019) Alexander S. Shashkov et al.   CARBOHYDRATE RESEARCH

Structure of the K128 capsular polysaccharide produced by Acinetobacter baumannii KZ-1093 from Kazakhstan

(2019) Nikolay P. Arbatsky et al.   CARBOHYDRATE RESEARCH

K17 capsular polysaccharide produced by Acinetobacter baumannii isolate G7 contains an amide of 2-acetamido-2-deoxy-d-galacturonic acid with d-alanine

(2019) Johanna J. Kenyon et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Emergence, molecular mechanisms and global spread of carbapenem-resistant Acinetobacter baumannii

(2019) Mohammad Hamidian et al.   Microbial Genomics

Structure and gene cluster of the K125 capsular polysaccharide from Acinetobacter baumannii MAR13-1452

(2018) Nikolay P. Arbatsky et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

(2018) Ryan R. Wick et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Acinetobacter baumannii isolate BAL_212 from Vietnam produces the K57 capsular polysaccharide containing a rarely occurring amino sugar N-acetylviosamine

(2018) Johanna J. Kenyon et al.   MICROBIOLOGY-SGM

Functional analysis and anti-virulent properties of a new depolymerase from a myovirus that infects Acinetobacter baumannii capsule K45

(2018) Hugo Oliveira et al.   JOURNAL OF VIROLOGY

Ability of phages to infect Acinetobacter calcoaceticus-Acinetobacter baumannii complex species through acquisition of different pectate lyase depolymerase domains

(2017) Hugo Oliveira et al.   ENVIRONMENTAL MICROBIOLOGY

Acinetobacter baumannii K11 and K83 capsular polysaccharides have the same 6-deoxy- l -talose-containing pentasaccharide K units but different linkages between the K units

(2017) Johanna J. Kenyon et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

The KL24 gene cluster and a genomic island encoding a Wzy polymerase contribute genes needed for synthesis of the K24 capsular polysaccharide by the multiply antibiotic resistant Acinetobacter baumannii isolate RCH51

(2017) Johanna J Kenyon et al.   MICROBIOLOGY-SGM

A medically relevant capsular polysaccharide in Acinetobacter baumannii is a potential vaccine candidate

(2017) Feng-Ling Yang et al.   VACCINE

5,7-Di-N-acetyl-8-epiacinetaminic acid: A new non-2-ulosonic acid found in the K73 capsule produced by an Acinetobacter baumannii isolate from Singapore

(2017) Johanna J. Kenyon et al.   Scientific Reports

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Related structures of neutral capsular polysaccharides of Acinetobacter baumannii isolates that carry related capsule gene clusters KL43, KL47, and KL88

(2016) Alexander S. Shashkov et al.   CARBOHYDRATE RESEARCH

K19 capsular polysaccharide of Acinetobacter baumannii is produced via a Wzy polymerase encoded in a small genomic island rather than the KL19 capsule gene cluster

(2016) Johanna J. Kenyon et al.   MICROBIOLOGY-SGM

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

Structure elucidation of the capsular polysaccharide of Acinetobacter baumannii AB5075 having the KL25 capsule biosynthesis locus

(2015) Sof'ya N. Senchenkova et al.   CARBOHYDRATE RESEARCH

Structural determination of the K14 capsular polysaccharide from an ST25 Acinetobacter baumannii isolate, D46

(2015) Johanna J. Kenyon et al.   CARBOHYDRATE RESEARCH

Structure of the neutral capsular polysaccharide of Acinetobacter baumannii NIPH146 that carries the KL37 capsule gene cluster

(2015) Nikolay P. Arbatsky et al.   CARBOHYDRATE RESEARCH

Structures of three different neutral polysaccharides of Acinetobacter baumannii, NIPH190, NIPH201, and NIPH615, assigned to K30, K45, and K48 capsule types, respectively, based on capsule biosynthesis gene clusters

(2015) Alexander S. Shashkov et al.   CARBOHYDRATE RESEARCH

5,7-di-N-acetyl-acinetaminic acid: A novel non-2-ulosonic acid found in the capsule of an Acinetobacter baumannii isolate

(2015) Johanna J Kenyon et al.   GLYCOBIOLOGY

Acinetobacter baumanniiK27 and K44 capsular polysaccharides have the same K unit but different structures due to the presence of distinctwzygenes in otherwise closely related K gene clusters

(2015) Alexander S Shashkov et al.   GLYCOBIOLOGY

Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage

(2015) Jason W. Sahl et al.   Scientific Reports

Structure of the K2 capsule associated with the KL2 gene cluster of Acinetobacter baumannii

(2014) Johanna J Kenyon et al.   GLYCOBIOLOGY

Variation in the OC Locus of Acinetobacter baumannii Genomes Predicts Extensive Structural Diversity in the Lipooligosaccharide

(2014) Johanna J. Kenyon et al.   PLoS One

Insertions in the OCL1 locus of Acinetobacter baumannii lead to shortened lipooligosaccharides

(2014) Johanna J. Kenyon et al.   RESEARCH IN MICROBIOLOGY

New Insights into Dissemination and Variation of the Health Care-Associated Pathogen Acinetobacter baumannii from Genomic Analysis

(2014) M. S. Wright et al.   mBio

The K1 Capsular Polysaccharide from Acinetobacter baumannii Is a Potential Therapeutic Target via Passive Immunization

(2013) Thomas A. Russo et al.   INFECTION AND IMMUNITY

A common pathway forO-linked protein-glycosylation and synthesis of capsule inAcinetobacter baumannii

(2013) Robert G. Lees-Miller et al.   MOLECULAR MICROBIOLOGY

Variation in the Complex Carbohydrate Biosynthesis Loci of Acinetobacter baumannii Genomes

(2013) Johanna J. Kenyon et al.   PLoS One

Diversity in the Major Polysaccharide Antigen of Acinetobacter Baumannii Assessed by DNA Sequencing, and Development of a Molecular Serotyping Scheme

(2013) Dalong Hu et al.   PLoS One

Global evolution of multidrug-resistant Acinetobacter baumannii clonal lineages

(2012) Raffaele Zarrilli et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Identification and structural determination of the capsular polysaccharides from two Acinetobacter baumannii clinical isolates, MG1 and SMAL

(2011) Eleonora Fregolino et al.   CARBOHYDRATE RESEARCH

The K1 Capsular Polysaccharide of Acinetobacter baumannii Strain 307-0294 Is a Major Virulence Factor

(2010) T. A. Russo et al.   INFECTION AND IMMUNITY

The Population Structure of Acinetobacter baumannii: Expanding Multiresistant Clones from an Ancestral Susceptible Genetic Pool

(2010) Laure Diancourt et al.   PLoS One