CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
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Title
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
Publisher
Oxford University Press (OUP)
Online
2019-10-05
DOI
10.1093/nar/gkz915
References
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Related references
Note: Only part of the references are listed.- Origins and evolution of CRISPR-Cas systems
- (2019) Eugene V. Koonin et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- CRISPR Cpf1 proteins: structure, function and implications for genome editing
- (2019) Fatemeh Safari et al. Cell and Bioscience
- CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
- (2018) David Couvin et al. NUCLEIC ACIDS RESEARCH
- CRISPR Visualizer: rapid identification and visualization of CRISPR loci via an automated high-throughput processing pipeline
- (2018) Matthew A. Nethery et al. RNA Biology
- The Pfam protein families database in 2019
- (2018) Sara El-Gebali et al. NUCLEIC ACIDS RESEARCH
- CRISPRStudio: A User-Friendly Software for Rapid CRISPR Array Visualization
- (2018) Moïra Dion et al. Viruses-Basel
- HMMCAS: a web tool for the identification and domain annotations of Cas proteins
- (2017) Guoshi Chai et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Diversity and evolution of class 2 CRISPR–Cas systems
- (2017) Sergey Shmakov et al. NATURE REVIEWS MICROBIOLOGY
- The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes
- (2017) Sergey A. Shmakov et al. mBio
- Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems
- (2017) Sukrit Silas et al. eLife
- MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes
- (2017) Abraham G. Moller et al. PeerJ
- CRISPRDetect: A flexible algorithm to define CRISPR arrays
- (2016) Ambarish Biswas et al. BMC GENOMICS
- Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
- (2015) Sergey Shmakov et al. MOLECULAR CELL
- An updated evolutionary classification of CRISPR–Cas systems
- (2015) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Classification and evolution of type II CRISPR-Cas systems
- (2014) Krzysztof Chylinski et al. NUCLEIC ACIDS RESEARCH
- MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
- (2014) Sophie S. Abby et al. PLoS One
- Crass: identification and reconstruction of CRISPR from unassembled metagenomic data
- (2013) Connor T. Skennerton et al. NUCLEIC ACIDS RESEARCH
- Evolution and classification of the CRISPR–Cas systems
- (2011) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- The NCBI Taxonomy database
- (2011) S. Federhen NUCLEIC ACIDS RESEARCH
- CRISPI: a CRISPR interactive database
- (2009) C. Rousseau et al. BIOINFORMATICS
- CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats
- (2008) I. Grissa et al. NUCLEIC ACIDS RESEARCH
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