Heterosis and Hybrid Crop Breeding: A Multidisciplinary Review

A unified strategy for West African pearl millet hybrid and heterotic group development

(2020) Felix T. Sattler et al.   CROP SCIENCE

Optimized breeding strategies to harness genetic resources with different performance levels

(2020) Antoine Allier et al.   BMC GENOMICS

Reinventing quantitative genetics for plant breeding: something old, something new, something borrowed, something BLUE

(2020) Rex Bernardo   HEREDITY

Single‐parent expression drives dynamic gene expression complementation in maize hybrids

(2020) Zhi Li et al.   PLANT JOURNAL

Deleterious Mutation Burden and its Association with Complex Traits in Sorghum (Sorghum bicolor)

(2019) Ravi Valluru et al.   GENETICS

Optimal Designs for Genomic Selection in Hybrid Crops

(2019) Tingting Guo et al.   Molecular Plant

Clonal seeds from hybrid rice by simultaneous genome engineering of meiosis and fertilization genes

(2019) Chun Wang et al.   NATURE BIOTECHNOLOGY

Use of F2 Bulks in Training Sets for Genomic Prediction of Combining Ability and Hybrid Performance

(2019) Frank Technow   G3-Genes Genomes Genetics

Design of training populations for selective phenotyping in genomic prediction

(2019) Deniz Akdemir et al.   Scientific Reports

Technological advances in maize breeding: past, present and future

(2019) Carson Andorf et al.   THEORETICAL AND APPLIED GENETICS

Testcross performance of doubled haploid lines from European flint maize landraces is promising for broadening the genetic base of elite germplasm

(2019) Pedro C. Brauner et al.   THEORETICAL AND APPLIED GENETICS

Homeologous Epistasis in Wheat: The Search for an Immortal Hybrid

(2019) Nicholas Santantonio et al.   GENETICS

Optimizing Selection and Mating in Genomic Selection with a Look-Ahead Approach: An Operations Research Framework

(2019) Saba Moeinizade et al.   G3-Genes Genomes Genetics

An elucidation of over a century old enigma in genetics—Heterosis

(2019) Diddahally R. Govindaraju   PLOS BIOLOGY

Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize

(2019) Wei Xue et al.   GENETICS

Genome‐wide identification and analysis of heterotic loci in three maize hybrids

(2019) Hongjun Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Joint Use of Genome, Pedigree and Their Interaction with Environment for Predicting the Performance of Wheat Lines in New Environments

(2019) Reka Howard et al.   G3-Genes Genomes Genetics

European maize landraces made accessible for plant breeding and genome-based studies

(2019) Armin C. Hölker et al.   THEORETICAL AND APPLIED GENETICS

From mass selection to genomic selection: one century of breeding for quantitative yield components of oil palm (Elaeis guineensis Jacq.)

(2019) Achille Nyouma et al.   Tree Genetics & Genomes

Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs

(2019) Antoine Allier et al.   THEORETICAL AND APPLIED GENETICS

Novel strategies for genomic prediction of untested single-cross maize hybrids using unbalanced historical data

(2019) K. O. G. Dias et al.   THEORETICAL AND APPLIED GENETICS

Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection

(2019) Antoine Allier et al.   Frontiers in Genetics

Small RNA-based prediction of hybrid performance in maize

(2018) Felix Seifert et al.   BMC GENOMICS

Beyond Genomic Prediction: Combining Different Types ofomicsData Can Improve Prediction of Hybrid Performance in Maize

(2018) Tobias A. Schrag et al.   GENETICS

Expanding the BLUP alphabet for genomic prediction adaptable to the genetic architectures of complex traits

(2018) Jiabo Wang et al.   HEREDITY

The impact of using old germplasm on genetic merit and diversity-A cattle breed case study

(2018) Sonia E. Eynard et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Training genomic selection models across several breeding cycles increases genetic gain in oil palm in silico study

(2018) David Cros et al.   MOLECULAR BREEDING

Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection

(2018) Gregor Gorjanc et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of genomic selection to predict maize single-crosses obtained through different mating designs

(2018) Roberto Fristche-Neto et al.   THEORETICAL AND APPLIED GENETICS

Selection on Expected Maximum Haploid Breeding Values Can Increase Genetic Gain in Recurrent Genomic Selection

(2018) Dominik Müller et al.   G3-Genes Genomes Genetics

Phenotypic Data from Inbred Parents Can Improve Genomic Prediction in Pearl Millet Hybrids

(2018) Zhikai Liang et al.   G3-Genes Genomes Genetics

Beyond Genomic Prediction: Combining Different Types ofomicsData Can Improve Prediction of Hybrid Performance in Maize

(2018) Tobias A. Schrag et al.   GENETICS

Non-additive Effects in Genomic Selection

(2018) Luis Varona et al.   Frontiers in Genetics

Heterosis Is a Systemic Property Emerging From Non-linear Genotype-Phenotype Relationships: Evidence From in Vitro Genetics and Computer Simulations

(2018) Julie B. Fiévet et al.   Frontiers in Genetics

Prediction of Complex Traits: Robust Alternatives to Best Linear Unbiased Prediction

(2018) Daniel Gianola et al.   Frontiers in Genetics

Maize domestication and gene interaction

(2018) Michelle C. Stitzer et al.   NEW PHYTOLOGIST

Predictive ability of genome-assisted statistical models under various forms of gene action

(2018) Mehdi Momen et al.   Scientific Reports

On the Road to Breeding 4.0: Unraveling the Good, the Bad, and the Boring of Crop Quantitative Genomics

(2018) Jason G. Wallace et al.   Annual Review of Genetics

Reciprocal recurrent genomic selection: an attractive tool to leverage hybrid wheat breeding

(2018) Maximilian Rembe et al.   THEORETICAL AND APPLIED GENETICS

Accelerating crop genetic gains with genomic selection

(2018) Kai Peter Voss-Fels et al.   THEORETICAL AND APPLIED GENETICS

Across-years prediction of hybrid performance in maize using genomics

(2018) Tobias A. Schrag et al.   THEORETICAL AND APPLIED GENETICS

Breaking the curse of dimensionality to identify causal variants in Breeding 4

(2018) Guillaume P. Ramstein et al.   THEORETICAL AND APPLIED GENETICS

Improving Response in Genomic Selection with a Population-Based Selection Strategy: Optimal Population Value Selection

(2017) Matthew Goiffon et al.   GENETICS

Moving Beyond Managing Realized Genomic Relationship in Long-Term Genomic Selection

(2017) Herman De Beukelaer et al.   GENETICS

Orthogonal Estimates of Variances for Additive, Dominance, and Epistatic Effects in Populations

(2017) Zulma G. Vitezica et al.   GENETICS

Efficiency of genomic prediction of non-assessed single crosses

(2017) José Marcelo Soriano Viana et al.   HEREDITY

Prediction of complex traits: Conciliating genetics and statistics

(2017) E. Manfredi et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Including nonadditive genetic effects in mating programs to maximize dairy farm profitability

(2017) H. Aliloo et al.   JOURNAL OF DAIRY SCIENCE

Enhancing genetic gain in the era of molecular breeding

(2017) Yunbi Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery

(2017) John M Hickey et al.   NATURE GENETICS

Genome-wide regression models considering general and specific combining ability predict hybrid performance in oilseed rape with similar accuracy regardless of trait architecture

(2017) Christian R. Werner et al.   THEORETICAL AND APPLIED GENETICS

Omics-based hybrid prediction in maize

(2017) Matthias Westhues et al.   THEORETICAL AND APPLIED GENETICS

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum

(2017) Samuel B. Fernandes et al.   THEORETICAL AND APPLIED GENETICS

Genome-Based Identification of Heterotic Patterns in Rice

(2017) Ulrike Beukert et al.   Rice

Evaluating Methods of Updating Training Data in Long-Term Genomewide Selection

(2017) Jeffrey L. Neyhart et al.   G3-Genes Genomes Genetics

Benefits of Dominance over Additive Models for the Estimation of Average Effects in the Presence of Dominance

(2017) Pascal Duenk et al.   G3-Genes Genomes Genetics

Multitrait, Random Regression, or Simple Repeatability Model in High-Throughput Phenotyping Data Improve Genomic Prediction for Wheat Grain Yield

(2017) Jin Sun et al.   Plant Genome

Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize

(2017) Jinliang Yang et al.   PLoS Genetics

Improving Response in Genomic Selection with a Population-Based Selection Strategy: Optimal Population Value Selection

(2017) Matthew Goiffon et al.   GENETICS

Moving Beyond Managing Realized Genomic Relationship in Long-Term Genomic Selection

(2017) Herman De Beukelaer et al.   GENETICS

Orthogonal Estimates of Variances for Additive, Dominance, and Epistatic Effects in Populations

(2017) Zulma G. Vitezica et al.   GENETICS

Predicting rice hybrid performance using univariate and multivariate GBLUP models based on North Carolina mating design II

(2016) X Wang et al.   HEREDITY

Genomic architecture of heterosis for yield traits in rice

(2016) Xuehui Huang et al.   NATURE

The effect of gene interactions on the long-term response to selection

(2016) Tiago Paixão et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimum breeding strategies using genomic selection for hybrid breeding in wheat, maize, rye, barley, rice and triticale

(2016) Jose J. Marulanda et al.   THEORETICAL AND APPLIED GENETICS

A unified framework for hybrid breeding and the establishment of heterotic groups in wheat

(2016) Philipp H. G. Boeven et al.   THEORETICAL AND APPLIED GENETICS

Genomic Prediction of Single Crosses in the Early Stages of a Maize Hybrid Breeding Pipeline

(2016) D. C. Kadam et al.   G3-Genes Genomes Genetics

The Genetic Architecture of Quantitative Traits Cannot Be Inferred from Variance Component Analysis

(2016) Wen Huang et al.   PLoS Genetics

Efficient Breeding by Genomic Mating

(2016) Deniz Akdemir et al.   Frontiers in Genetics

Long-term genomic selection for heterosis without dominance in multiplicative traits: case study of bunch production in oil palm

(2015) David Cros et al.   BMC GENOMICS

Perspectives for Genomic Selection Applications and Research in Plants

(2015) Nicolas Heslot et al.   CROP SCIENCE

Selection on Optimal Haploid Value Increases Genetic Gain and Preserves More Genetic Diversity Relative to Genomic Selection

(2015) Hans D. Daetwyler et al.   GENETICS

Heterosis and outbreeding depression in crosses between natural populations of Arabidopsis thaliana

(2015) C G Oakley et al.   HEREDITY

Resemblance between two relatives - animal and plant breeding

(2015) C.C. Schön et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genetic contributions and their optimization

(2015) J.A. Woolliams et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Disaggregating polyploidy, parental genome dosage and hybridity contributions to heterosis in Arabidopsis thaliana

(2015) Antoine Fort et al.   NEW PHYTOLOGIST

Genome-based establishment of a high-yielding heterotic pattern for hybrid wheat breeding

(2015) Yusheng Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Recombination in diverse maize is stable, predictable, and associated with genetic load

(2015) Eli Rodgers-Melnick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic selection in wheat: optimum allocation of test resources and comparison of breeding strategies for line and hybrid breeding

(2015) C. Friedrich H. Longin et al.   THEORETICAL AND APPLIED GENETICS

Genomic Heritability: What Is It?

(2015) Gustavo de los Campos et al.   PLoS Genetics

Hierarchical additive effects on heterosis in rice (Oryza sativa L.)

(2015) Zhiwu Dan et al.   Frontiers in Plant Science

Selection on Optimal Haploid Value Increases Genetic Gain and Preserves More Genetic Diversity Relative to Genomic Selection

(2015) Hans D. Daetwyler et al.   GENETICS

Artificial selection with traditional or genomic relationships: consequences in coancestry and genetic diversity

(2015) Silvia Teresa Rodríguez-Ramilo et al.   Frontiers in Genetics

Utilization of crop heterosis: a review

(2014) Donghui Fu et al.   EUPHYTICA

Detecting epistasis in human complex traits

(2014) Wen-Hua Wei et al.   NATURE REVIEWS GENETICS

Genomic selection in hybrid breeding

(2014) Yusheng Zhao et al.   PLANT BREEDING

The Maize TFome - development of a transcription factor open reading frame collection for functional genomics

(2014) Brett Burdo et al.   PLANT JOURNAL

Long-term perspective of hybrid versus line breeding in wheat based on quantitative genetic theory

(2014) C. Friedrich H. Longin et al.   THEORETICAL AND APPLIED GENETICS

Heterotic groups of tropical indica rice germplasm

(2014) Kai Wang et al.   THEORETICAL AND APPLIED GENETICS

Progress Toward Understanding Heterosis in Crop Plants

(2013) Patrick S. Schnable et al.   Annual Review of Plant Biology

A criticism of the value of midparent in polyploidization

(2013) A. Gianinetti   JOURNAL OF EXPERIMENTAL BOTANY

Genomic and epigenetic insights into the molecular bases of heterosis

(2013) Z. Jeffrey Chen   NATURE REVIEWS GENETICS

Genomic dosage effects on heterosis in triploid maize

(2013) H. Yao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hybrid wheat: quantitative genetic parameters and consequences for the design of breeding programs

(2013) Carl Friedrich Horst Longin et al.   THEORETICAL AND APPLIED GENETICS

Polyploids as a “model system” for the study of heterosis

(2013) Jacob D. Washburn et al.   Plant Reproduction

Multiple-Trait Genomic Selection Methods Increase Genetic Value Prediction Accuracy

(2012) Yi Jia et al.   GENETICS

Long-term selection strategies for complex traits using high-density genetic markers

(2012) K.E. Kemper et al.   JOURNAL OF DAIRY SCIENCE

Reverse breeding in Arabidopsis thaliana generates homozygous parental lines from a heterozygous plant

(2012) Erik Wijnker et al.   NATURE GENETICS

Historical genomics of North American maize

(2012) J. van Heerwaarden et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic prediction of hybrid performance in maize with models incorporating dominance and population specific marker effects

(2012) Frank Technow et al.   THEORETICAL AND APPLIED GENETICS

Hybrid breeding in autogamous cereals

(2012) Carl Friedrich Horst Longin et al.   THEORETICAL AND APPLIED GENETICS

Effectiveness of Genomic Prediction of Maize Hybrid Performance in Different Breeding Populations and Environments

(2012) Vanessa S. Windhausen et al.   G3-Genes Genomes Genetics

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Fitness Landscapes: An Alternative Theory for the Dominance of Mutation

(2011) Federico Manna et al.   GENETICS

Heterosis: one boat at a time, or a rising tide?

(2011) Shawn Kaeppler   NEW PHYTOLOGIST

Molecular mechanisms of epistasis within and between genes

(2011) Ben Lehner   TRENDS IN GENETICS

Nonadditive Protein Accumulation Patterns in Maize (Zea maysL.) Hybrids during Embryo Development

(2010) Caroline Marcon et al.   JOURNAL OF PROTEOME RESEARCH

The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato

(2010) Uri Krieger et al.   NATURE GENETICS

The evolutionary ecology of clonally propagated domesticated plants

(2010) Doyle McKey et al.   NEW PHYTOLOGIST

On epistasis: why it is unimportant in polygenic directional selection

(2010) J. F. Crow   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Heterosis

(2010) J. A. Birchler et al.   PLANT CELL

A kinetic model describes metabolic response to perturbations and distribution of flux control in the benzenoid network ofPetunia hybrida

(2010) Amy Marshall Colón et al.   PLANT JOURNAL

Additive Genetic Variability and the Bayesian Alphabet

(2009) D. Gianola et al.   GENETICS

Increased accuracy of artificial selection by using the realized relationship matrix

(2009) B. J. HAYES et al.   Genetics Research

A relationship matrix including full pedigree and genomic information

(2009) A. Legarra et al.   JOURNAL OF DAIRY SCIENCE

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Heterosis Is Prevalent for Multiple Traits in Diverse Maize Germplasm

(2009) Sherry A. Flint-Garcia et al.   PLoS One

Genomic selection: prediction of accuracy and maximisation of long term response

(2008) Mike Goddard   GENETICA

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Inbreeding depression and outbreeding depression in Digitalis purpurea: optimal outcrossing distance in a tetraploid

(2008) J. M. GRINDELAND   JOURNAL OF EVOLUTIONARY BIOLOGY

Epistasis — the essential role of gene interactions in the structure and evolution of genetic systems

(2008) Patrick C. Phillips   NATURE REVIEWS GENETICS

Data and Theory Point to Mainly Additive Genetic Variance for Complex Traits

(2008) William G. Hill et al.   PLoS Genetics