Characterization of the human skin resistome and identification of two microbiota cutotypes

Host-Specific Evolutionary and Transmission Dynamics Shape the Functional Diversification of Staphylococcus epidermidis in Human Skin

(2020) Wei Zhou et al.   CELL

A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina

(2020) Bing Ma et al.   Nature Communications

Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms

(2020) Jian Sun et al.   Nature Communications

The impact of skin care products on skin chemistry and microbiome dynamics

(2019) Amina Bouslimani et al.   BMC BIOLOGY

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

(2019) Denis Bertrand et al.   NATURE BIOTECHNOLOGY

Age and Mothers: Potent Influences of Children’s Skin Microbiota

(2019) Ting Zhu et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Microbe-host interplay in atopic dermatitis and psoriasis

(2019) Nanna Fyhrquist et al.   Nature Communications

Shift in skin microbiota of Western European women across aging

(2018) R. Jugé et al.   JOURNAL OF APPLIED MICROBIOLOGY

Best practices for analysing microbiomes

(2018) Rob Knight et al.   NATURE REVIEWS MICROBIOLOGY

Intake of specific types of fruit and vegetables is associated with higher levels of skin yellowness in young women: A cross-sectional study

(2018) Daisy H Coyle et al.   NUTRITION RESEARCH

Fragile skin microbiomes in megacities are assembled by a predominantly niche-based process

(2018) Hye-Jin Kim et al.   Science Advances

Profile of the skin microbiota in a healthy Chinese population

(2018) Wanfang Zhai et al.   JOURNAL OF DERMATOLOGY

Understanding the microbial basis of body odor in pre-pubescent children and teenagers

(2018) Tze Hau Lam et al.   Microbiome

Collagen concentration on the facial skin of postmenopausal women after topical treatment with estradiol and genistein: a randomized double-blind controlled trial

(2017) Lidia Aragão Silva et al.   GYNECOLOGICAL ENDOCRINOLOGY

China's antibiotic resistance problems

(2017) David L Paterson et al.   LANCET INFECTIOUS DISEASES

Diversity of bacterial communities on the facial skin of different age-group Thai males

(2017) Alisa Wilantho et al.   PeerJ

A reference human genome dataset of the BGISEQ-500 sequencer

(2017) Jie Huang et al.   GigaScience

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

(2017) Chao Fang et al.   GigaScience

SOAPnuke: a MapReduce acceleration-supported software for integrated quality control and preprocessing of high-throughput sequencing data

(2017) Yuxin Chen et al.   GigaScience

Enterotypes in the landscape of gut microbial community composition

(2017) Paul I. Costea et al.   Nature Microbiology

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

(2017) Adrian Tett et al.   npj Biofilms and Microbiomes

Aging-related changes in the diversity of women’s skin microbiomes associated with oral bacteria

(2017) Nakako Shibagaki et al.   Scientific Reports

Temporal Stability of the Human Skin Microbiome

(2016) Julia Oh et al.   CELL

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare

(2016) Kern Rei Chng et al.   Nature Microbiology

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

(2015) Duy Tin Truong et al.   NATURE METHODS

Insights into the pan-microbiome: skin microbial communities of Chinese individuals differ from other racial groups

(2015) Marcus H. Y. Leung et al.   Scientific Reports

China, what antibiotics and what volumes are used in food production animals?

(2015) Peter Collignon et al.   Antimicrobial Resistance and Infection Control

Macrolide, Lincosamide, and Streptogramin B Resistance in Lipophilic Corynebacteria Inhabiting Healthy Human Skin

(2014) Magdalena Szemraj et al.   Microbial Drug Resistance

Biogeography and individuality shape function in the human skin metagenome

(2014) Julia Oh et al.   NATURE

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

On the integrated maximum likelihood estimators for a closed population capture–recapture model with unequal capture probabilities

(2014) Luis Ernesto B. Salasar et al.   STATISTICS

DNA microarray analysis reveals that antibiotic resistance-gene diversity in human gut microbiota is age related

(2014) Na Lu et al.   Scientific Reports

Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates

(2013) Zongxin Ling et al.   BMC GENOMICS

Country-specific antibiotic use practices impact the human gut resistome

(2013) K. Forslund et al.   GENOME RESEARCH

Community differentiation of the cutaneous microbiota in psoriasis

(2013) Alexander V Alekseyenko et al.   Microbiome

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome

(2012) Sanqing Yuan et al.   PLoS One

China Takes Aim at Rampant Antibiotic Resistance

(2012) M. Hvistendahl   SCIENCE

Antimicrobial activities of skincare preparations from plant extracts

(2011) P.G Kareru et al.   African Journal of Traditional Complementary and Alternative Medicines

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora

(2009) M. O. A. Sommer et al.   SCIENCE

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

A diversity profile of the human skin microbiota

(2008) E. A. Grice et al.   GENOME RESEARCH