A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina
Authors
Keywords
-
Journal
Nature Communications
Volume 11, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-02-26
DOI
10.1038/s41467-020-14677-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The vaginal microbiome and preterm birth
- (2019) Jennifer M. Fettweis et al. NATURE MEDICINE
- Racioethnic diversity in the dynamics of the vaginal microbiome during pregnancy
- (2019) Myrna G. Serrano et al. NATURE MEDICINE
- Genetic Heterogeneity and Taxonomic Diversity among Gardnerella Species
- (2019) Joana Castro et al. TRENDS IN MICROBIOLOGY
- Metatranscriptome Analysis of the Vaginal Microbiota Reveals Potential Mechanisms for Protection against Metronidazole in Bacterial Vaginosis
- (2018) Zhi-Luo Deng et al. mSphere
- On the Road to Strain-Resolved Comparative Metagenomics
- (2018) Nicola Segata mSystems
- Metagenomic analysis with strain-level resolution reveals fine-scale variation in the human pregnancy microbiome
- (2018) Daniela S. Aliaga Goltsman et al. GENOME RESEARCH
- The metagenome of the female upper reproductive tract
- (2018) Chen Chen et al. GigaScience
- Focusing the diversity of Gardnerella vaginalis through the lens of ecotypes
- (2017) Omar E. Cornejo et al. Evolutionary Applications
- Lactobacillus -Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women
- (2017) Christina Gosmann et al. IMMUNITY
- Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies
- (2017) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Strain profiling and epidemiology of bacterial species from metagenomic sequencing
- (2017) Davide Albanese et al. Nature Communications
- Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
- (2017) Adrian Tett et al. npj Biofilms and Microbiomes
- The Vaginal Microbiome: Current Understanding and Future Directions
- (2016) David H. Martin et al. JOURNAL OF INFECTIOUS DISEASES
- Database Resources of the National Center for Biotechnology Information
- (2016) NUCLEIC ACIDS RESEARCH
- iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)
- (2016) T. C. Hsieh et al. Methods in Ecology and Evolution
- Advancing gut microbiome research using cultivation
- (2015) Morten OA Sommer CURRENT OPINION IN MICROBIOLOGY
- A catalog of the mouse gut metagenome
- (2015) Liang Xiao et al. NATURE BIOTECHNOLOGY
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
- (2015) Jaime Huerta-Cepas et al. NUCLEIC ACIDS RESEARCH
- Gene3D: expanding the utility of domain assignments
- (2015) Su Datt Lam et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Linking Microbiota to Human Diseases: A Systems Biology Perspective
- (2015) Hao Wu et al. TRENDS IN ENDOCRINOLOGY AND METABOLISM
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- An integrated catalog of reference genes in the human gut microbiome
- (2014) Junhua Li et al. NATURE BIOTECHNOLOGY
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins
- (2014) Emilio Potenza et al. NUCLEIC ACIDS RESEARCH
- HAMAP in 2015: updates to the protein family classification and annotation system
- (2014) Ivo Pedruzzi et al. NUCLEIC ACIDS RESEARCH
- SMART: recent updates, new developments and status in 2015
- (2014) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Role of the intestinal microbiome in liver disease
- (2013) Jorge Henao-Mejia et al. JOURNAL OF AUTOIMMUNITY
- Richness of human gut microbiome correlates with metabolic markers
- (2013) Emmanuelle Le Chatelier et al. NATURE
- Dietary intervention impact on gut microbial gene richness
- (2013) Aurélie Cotillard et al. NATURE
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Finished bacterial genomes from shotgun sequence data
- (2012) F. J. Ribeiro et al. GENOME RESEARCH
- Orthologous Gene Clusters and Taxon Signature Genes for Viruses of Prokaryotes
- (2012) D. M. Kristensen et al. JOURNAL OF BACTERIOLOGY
- Comparative Genomic Analyses of 17 Clinical Isolates of Gardnerella vaginalis Provide Evidence of Multiple Genetically Isolated Clades Consistent with Subspeciation into Genovars
- (2012) A. Ahmed et al. JOURNAL OF BACTERIOLOGY
- A framework for human microbiome research
- (2012) NATURE
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- The human microbiome: at the interface of health and disease
- (2012) Ilseung Cho et al. NATURE REVIEWS GENETICS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome
- (2012) Dirk Gevers et al. PLOS BIOLOGY
- Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
- (2012) Georgia Giannoukos et al. GENOME BIOLOGY
- Using Sybil for interactive comparative genomics of microbes on the web
- (2011) David R. Riley et al. BIOINFORMATICS
- KEGG for integration and interpretation of large-scale molecular data sets
- (2011) M. Kanehisa et al. NUCLEIC ACIDS RESEARCH
- Modernizing Reference Genome Assemblies
- (2011) Deanna M. Church et al. PLOS BIOLOGY
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Ab initio gene identification in metagenomic sequences
- (2010) Wenhan Zhu et al. NUCLEIC ACIDS RESEARCH
- Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential
- (2010) Carl J. Yeoman et al. PLoS One
- At the crossroads of vaginal health and disease, the genome sequence of Lactobacillus iners AB-1
- (2010) J. M. Macklaim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Vaginal microbiome of reproductive-age women
- (2010) J. Ravel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Catalog of Reference Genomes from the Human Microbiome
- (2010) et al. SCIENCE
- The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data
- (2010) David M. Tanenbaum et al. Standards in Genomic Sciences
- Obesity and the human microbiome
- (2009) Ruth E Ley CURRENT OPINION IN GASTROENTEROLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- New concepts in the etiology of bacterial vaginosis
- (2009) Jane R. Schwebke Current Infectious Disease Reports
- Functional and Phylogenetic Characterization of Vaginolysin, the Human-Specific Cytolysin from Gardnerella vaginalis
- (2008) S. E. Gelber et al. JOURNAL OF BACTERIOLOGY
- InterPro: the integrative protein signature database
- (2008) S. Hunter et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search