Network Analysis of Gene Transcriptions of Arabidopsis thaliana in Spaceflight Microgravity

Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data

(2020) Aditya Pratapa et al.   NATURE METHODS

Variation in the transcriptome of different ecotypes of Arabidopsis thaliana reveals signatures of oxidative stress in plant responses to spaceflight

(2019) Won-Gyu Choi et al.   AMERICAN JOURNAL OF BOTANY

Differential transcriptional profile through cell cycle progression in Arabidopsis cultures under simulated microgravity

(2019) Khaled Y. Kamal et al.   GENOMICS

Identification of Essential Proteins Based on Improved HITS Algorithm

(2019) Xiujuan Lei et al.   Genes

The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development

(2019) Alexey V. Doroshkov et al.   BMC PLANT BIOLOGY

On the Origin of Biomolecular Networks

(2019) Heeralal Janwa et al.   Frontiers in Genetics

RNAseq Analysis of the Response of Arabidopsis thaliana to Fractional Gravity Under Blue-Light Stimulation During Spaceflight

(2019) Raúl Herranz et al.   Frontiers in Plant Science

Comparison of Microgravity Analogs to Spaceflight in Studies of Plant Growth and Development

(2019) John Z. Kiss et al.   Frontiers in Plant Science

SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks

(2018) Rong Zhang et al.   PLoS Computational Biology

Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets

(2018) Keiichi Mochida et al.   Frontiers in Plant Science

Network propagation: a universal amplifier of genetic associations

(2017) Lenore Cowen et al.   NATURE REVIEWS GENETICS

Identifying influential nodes in complex networks based on AHP

(2017) Tian Bian et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Genetic dissection of the Arabidopsis spaceflight transcriptome: Are some responses dispensable for the physiological adaptation of plants to spaceflight?

(2017) Anna-Lisa Paul et al.   PLoS One

Patterns of Arabidopsis gene expression in the face of hypobaric stress

(2017) Anna-Lisa Paul et al.   AoB Plants

Cell Wall Heterogeneity in Root Development of Arabidopsis

(2016) Marc Somssich et al.   Frontiers in Plant Science

Spaceflight Induces Specific Alterations in the Proteomes of Arabidopsis

(2015) Robert J. Ferl et al.   ASTROBIOLOGY

An Arabidopsis gene regulatory network for secondary cell wall synthesis

(2014) M. Taylor-Teeples et al.   NATURE

Systematic Identification of Cell-Wall Related Genes in Populus Based on Analysis of Functional Modules in Co-Expression Network

(2014) Bin Cai et al.   PLoS One

Organ-specific remodeling of the Arabidopsis transcriptome in response to spaceflight

(2013) Anna-Lisa Paul et al.   BMC PLANT BIOLOGY

Gene Regulatory Networks during Arabidopsis Root Vascular Development

(2013) Sedeer El-Showk et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Spaceflight Transcriptomes: Unique Responses to a Novel Environment

(2012) Anna-Lisa Paul et al.   ASTROBIOLOGY

Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis

(2012) Shan Wang et al.   BMC PLANT BIOLOGY

Gene regulatory networks in the Arabidopsis root

(2012) Miguel De Lucas et al.   CURRENT OPINION IN PLANT BIOLOGY

Evolution of Plant Nucleotide-Sugar Interconversion Enzymes

(2011) Yanbin Yin et al.   PLoS One

The development of Arabidopsis as a model plant

(2010) Maarten Koornneef et al.   PLANT JOURNAL

From gene expression to gene regulatory networks in Arabidopsis thaliana

(2009) Chris J Needham et al.   BMC Systems Biology