An Arabidopsis gene regulatory network for secondary cell wall synthesis

Identification of direct targets of transcription factor MYB46 provides insights into the transcriptional regulation of secondary wall biosynthesis

(2014) Won-Chan Kim et al.   PLANT MOLECULAR BIOLOGY

Power graph compression reveals dominant relationships in genetic transcription networks

(2013) Sebastian E. Ahnert   Molecular BioSystems

Navigating the transcriptional roadmap regulating plant secondary cell wall deposition

(2013) Steven G. Hussey et al.   Frontiers in Plant Science

Inferring gene regulatory networks by ANOVA

(2012) Robert Küffner et al.   BIOINFORMATICS

TIGRESS: Trustful Inference of Gene REgulation using Stability Selection

(2012) Anne-Claire Haury et al.   BMC Systems Biology

Wisdom of crowds for robust gene network inference

(2012) Daniel Marbach et al.   NATURE METHODS

MYB46 directly regulates the gene expression of secondary wall-associated cellulose synthases in Arabidopsis

(2012) Won-Chan Kim et al.   PLANT JOURNAL

Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis

(2012) Won-Chan Kim et al.   PLANT MOLECULAR BIOLOGY

Cell Identity Regulators Link Development and Stress Responses in the Arabidopsis Root

(2011) Anjali S. Iyer-Pascuzzi et al.   DEVELOPMENTAL CELL

A stele-enriched gene regulatory network in the Arabidopsis root

(2011) S. M. Brady et al.   Molecular Systems Biology

The ELF4–ELF3–LUX complex links the circadian clock to diurnal control of hypocotyl growth

(2011) Dmitri A. Nusinow et al.   NATURE

Enhanced Y1H assays for Arabidopsis

(2011) Allison Gaudinier et al.   NATURE METHODS

MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes

(2011) Ruiqin Zhong et al.   PLANT AND CELL PHYSIOLOGY

The E2F transcription factor family regulates CENH3 expression in Arabidopsis thaliana

(2011) Stefan Heckmann et al.   PLANT JOURNAL

VASCULAR-RELATED NAC-DOMAIN 7 directly regulates the expression of a broad range of genes for xylem vessel formation

(2011) Masatoshi Yamaguchi et al.   PLANT JOURNAL

What does biologically meaningful mean? A perspective on gene regulatory network validation

(2011) Albertha JM Walhout   GENOME BIOLOGY

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

ArabidopsisVASCULAR-RELATED NAC-DOMAIN6 Directly Regulates the Genes That Govern Programmed Cell Death and Secondary Wall Formation during Xylem Differentiation

(2010) Kyoko Ohashi-Ito et al.   PLANT CELL

VND-INTERACTING2, a NAC Domain Transcription Factor, Negatively Regulates Xylem Vessel Formation inArabidopsis

(2010) Masatoshi Yamaguchi et al.   PLANT CELL

VASCULAR-RELATED NAC-DOMAIN6 and VASCULAR-RELATED NAC-DOMAIN7 Effectively Induce Transdifferentiation into Xylem Vessel Elements under Control of an Induction System

(2010) M. Yamaguchi et al.   PLANT PHYSIOLOGY

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

(2010) Vân Anh Huynh-Thu et al.   PLoS One

DREAM4: Combining Genetic and Dynamic Information to Identify Biological Networks and Dynamical Models

(2010) Alex Greenfield et al.   PLoS One

puma: a Bioconductor package for propagating uncertainty in microarray analysis

(2009) Richard D Pearson et al.   BMC BIOINFORMATICS

MYB58 and MYB63 Are Transcriptional Activators of the Lignin Biosynthetic Pathway during Secondary Cell Wall Formation in Arabidopsis

(2009) J. Zhou et al.   PLANT CELL

Dissecting regulatory pathways of G1/S control in Arabidopsis: common and distinct targets of CYCD3;1, E2Fa and E2Fc

(2009) Sarah M. de Jager et al.   PLANT MOLECULAR BIOLOGY

A Functional Genomics Approach Reveals CHE as a Component of the Arabidopsis Circadian Clock

(2009) J. L. Pruneda-Paz et al.   SCIENCE

SIRENE: supervised inference of regulatory networks

(2008) F. Mordelet et al.   BIOINFORMATICS

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL

Cell-specific nitrogen responses mediate developmental plasticity

(2008) M. L. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

(2008) J. R. Dinneny et al.   SCIENCE