SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks

Massively parallel digital transcriptional profiling of single cells

(2017) Grace X. Y. Zheng et al.   Nature Communications

XMRF: an R package to fit Markov Networks to high-throughput genetics data

(2016) Ying-Wooi Wan et al.   BMC Systems Biology

Honest confidence regions and optimality in high-dimensional precision matrix estimation

(2016) Jana Janková et al.   TEST

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks

(2016) Ting Wang et al.   PLoS Computational Biology

Honest confidence regions and optimality in high-dimensional precision matrix estimation

(2016) Jana Janková et al.   TEST

Asymptotic normality and optimalities in estimation of large Gaussian graphical models

(2015) Zhao Ren et al.   ANNALS OF STATISTICS

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders

(2015) Neelroop N. Parikshak et al.   NATURE REVIEWS GENETICS

Confidence intervals for high-dimensional inverse covariance estimation

(2015) Jana Janková et al.   Electronic Journal of Statistics

Regularization Paths for Generalized Linear Models via Coordinate Descent

(2015) Jerome Friedman et al.   Journal of Statistical Software

Rcpp: SeamlessRandC++Integration

(2015) Dirk Eddelbuettel et al.   Journal of Statistical Software

Gaussian graphical model estimation with false discovery rate control

(2014) Weidong Liu   ANNALS OF STATISTICS

BiNA: A Visual Analytics Tool for Biological Network Data

(2014) Andreas Gerasch et al.   PLoS One

Beyond modules and hubs: the potential of gene coexpression networks for investigating molecular mechanisms of complex brain disorders

(2013) C. Gaiteri et al.   GENES BRAIN AND BEHAVIOR

A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines

(2013) L. Liang et al.   GENOME RESEARCH

Gene Coexpression Networks Reveal Key Drivers of Phenotypic Divergence in Lake Whitefish

(2013) Marie Filteau et al.   MOLECULAR BIOLOGY AND EVOLUTION

Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments

(2013) Quin F Wills et al.   NATURE BIOTECHNOLOGY

Quantitative single-cell RNA-seq with unique molecular identifiers

(2013) Saiful Islam et al.   NATURE METHODS

Single-cell analysis and sorting using droplet-based microfluidics

(2013) Linas Mazutis et al.   Nature Protocols

New Insights and Faster Computations for the Graphical Lasso

(2011) Daniela M. Witten et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

BisoGenet: a new tool for gene network building, visualization and analysis

(2010) Alexander Martin et al.   BMC BIOINFORMATICS

The powerful law of the power law and other myths in network biology

(2009) Gipsi Lima-Mendez et al.   Molecular BioSystems

Power-Law Distributions in Empirical Data

(2009) Aaron Clauset et al.   SIAM REVIEW

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

First-Order Methods for Sparse Covariance Selection

(2008) Alexandre d'Aspremont et al.   SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS