Trace Metal Contamination Impacts Predicted Functions More Than Structure of Marine Prokaryotic Biofilm Communities in an Anthropized Coastal Area

Metatranscriptomic Insights Into the Response of River Biofilm Communities to Ionic and Nano-Zinc Oxide Exposures

(2020) Jordyn Bergsveinson et al.   Frontiers in Microbiology

Microbial Colonization in Marine Environments: Overview of Current Knowledge and Emerging Research Topics

(2020) Gabriella Caruso   Journal of Marine Science and Engineering

Impacts of copper and lead exposure on prokaryotic communities from contaminated contrasted coastal seawaters: the influence of previous metal exposure

(2020) Clément Coclet et al.   FEMS MICROBIOLOGY ECOLOGY

Metatranscriptomic Analysis of Oil-Exposed Seawater Bacterial Communities Archived by an Environmental Sample Processor (ESP)

(2020) Kamila Knapik et al.   Microorganisms

A subcellular level study of copper speciation reveals the synergistic mechanism of microbial cells and EPS involved in copper binding in bacterial biofilms

(2020) Huirong Lin et al.   ENVIRONMENTAL POLLUTION

Long-term monitoring emphasizes impacts of the dredging on dissolved Cu and Pb contamination along with ultraplankton distribution and structure in Toulon Bay (NW Mediterranean Sea, France)

(2020) Nicolas Layglon et al.   MARINE POLLUTION BULLETIN

Metagenomic Analysis of Zinc Surface–Associated Marine Biofilms

(2019) Wei Ding et al.   MICROBIAL ECOLOGY

Copper Affects Composition and Functioning of Microbial Communities in Marine Biofilms at Environmentally Relevant Concentrations

(2019) Natàlia Corcoll et al.   Frontiers in Microbiology

Changes in Bacterioplankton Communities Resulting From Direct and Indirect Interactions With Trace Metal Gradients in an Urbanized Marine Coastal Area

(2019) Clément Coclet et al.   Frontiers in Microbiology

In search of microbial indicator taxa: shifts in stream bacterial communities along an urbanization gradient

(2019) Marie Simonin et al.   ENVIRONMENTAL MICROBIOLOGY

Biofilm facilitates metal accumulation onto microplastics in estuarine waters

(2019) Heather Richard et al.   SCIENCE OF THE TOTAL ENVIRONMENT

DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work

(2019) Hannah Weigand et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Shear Stress as a Major Driver of Marine Biofilm Communities in the NW Mediterranean Sea

(2019) Elisa C. P. Catão et al.   Frontiers in Microbiology

Seasonality combined with the orientation of surfaces influences the microbial community structure of biofilms in the deep Mediterranean Sea

(2019) Nikoleta Bellou et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Bacterial community rather than metals shaping metal resistance genes in water, sediment and biofilm in lakes from arid northwestern China

(2019) Wenjuan Song et al.   ENVIRONMENTAL POLLUTION

Evidence for selective bacterial community structuring on microplastics

(2018) Martin Ogonowski et al.   ENVIRONMENTAL MICROBIOLOGY

Evidence of niche partitioning among bacteria living on plastics, organic particles and surrounding seawaters

(2018) C. Dussud et al.   ENVIRONMENTAL POLLUTION

Short-term microbial effects of a large-scale mine-tailing storage facility collapse on the local natural environment

(2018) Heath W. Garris et al.   PLoS One

Trace metal contamination as a toxic and structuring factor impacting ultraphytoplankton communities in a multicontaminated Mediterranean coastal area

(2018) Clément Coclet et al.   PROGRESS IN OCEANOGRAPHY

Distribution of Archaeal Communities along the Coast of the Gulf of Finland and Their Response to Oil Contamination

(2018) Lijuan Yan et al.   Frontiers in Microbiology

Environmental Factors Support the Formation of Specific Bacterial Assemblages on Microplastics

(2018) Sonja Oberbeckmann et al.   Frontiers in Microbiology

Mature biofilm communities on synthetic polymers in seawater - Specific or general?

(2018) Inga V. Kirstein et al.   MARINE ENVIRONMENTAL RESEARCH

Dynamics of Sediment Microbial Functional Capacity and Community Interaction Networks in an Urbanized Coastal Estuary

(2018) Tianjiao Dai et al.   Frontiers in Microbiology

Bacterial Diversity and the Geochemical Landscape in the Southwestern Gulf of Mexico

(2018) E. Ernestina Godoy-Lozano et al.   Frontiers in Microbiology

Low concentrations of copper oxide nanoparticles alter microbial community structure and function of sediment biofilms

(2018) Lingzhan Miao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Polyurethane, epoxy resin and polydimethylsiloxane altered biofilm formation and mussel settlement

(2018) Xiao Liang et al.   CHEMOSPHERE

Remobilization of polycyclic aromatic hydrocarbons and organic matter in seawater during sediment resuspension experiments from a polluted coastal environment: Insights from Toulon Bay (France)

(2017) Catherine Guigue et al.   ENVIRONMENTAL POLLUTION

Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea

(2017) Caroline De Tender et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments

(2017) Marc Mußmann et al.   ISME Journal

Spatio-Temporal Variations of Marine Biofilm Communities Colonizing Artificial Substrata Including Antifouling Coatings in Contrasted French Coastal Environments

(2017) Jean-François Briand et al.   MICROBIAL ECOLOGY

Plastics in the North Atlantic garbage patch: A boat-microbe for hitchhikers and plastic degraders

(2017) Didier Debroas et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Exploring the Impacts of Anthropogenic Disturbance on Seawater and Sediment Microbial Communities in Korean Coastal Waters Using Metagenomics Analysis

(2017) Nam-Il Won et al.   International Journal of Environmental Research and Public Health

Spatial and seasonal variation in diversity and structure of microbial biofilms on marine plastics in Northern European waters

(2017) Sonja Oberbeckmann et al.   FEMS MICROBIOLOGY ECOLOGY

Analysis of biofilm bacterial communities under different shear stresses using size-fractionated sediment

(2017) Hongwei Fang et al.   Scientific Reports

Biofouling community composition across a range of environmental conditions and geographical locations suitable for floating marine renewable energy generation

(2016) Adrian K. Macleod et al.   BIOFOULING

A limited legacy effect of copper in marine biofilms

(2016) David J. McElroy et al.   MARINE POLLUTION BULLETIN

Biofilms: an emergent form of bacterial life

(2016) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Chemical multi-contamination drives benthic prokaryotic diversity in the anthropized Toulon Bay

(2016) Benjamin Misson et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metal fate and effects in estuaries: A review and conceptual model for better understanding of toxicity

(2016) Anderson Abel de Souza Machado et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments

(2016) Mathilde Jeanbille et al.   Frontiers in Microbiology

Monitoring trace metals in seawater using a diffusive gradient in thin film probe in Ulsan Bay, East Sea, Korea: Comparison with transplanted mussels

(2016) Mi Seon Kim et al.   Ocean Science Journal

A chronicle of the changes undergone by a maritime territory, the Bay of Toulon (Var Coast, France), and their consequences on PCB contamination

(2016) Emmanuel Wafo et al.   SpringerPlus

Diversity and Activity of Communities Inhabiting Plastic Debris in the North Pacific Gyre

(2016) Jessica A. Bryant et al.   mSystems

Microbes on a Bottle: Substrate, Season and Geography Influence Community Composition of Microbes Colonizing Marine Plastic Debris

(2016) Sonja Oberbeckmann et al.   PLoS One

Regional variations in the diversity and predicted metabolic potential of benthic prokaryotes in coastal northern Zhejiang, East China Sea

(2016) Kai Wang et al.   Scientific Reports

Silver Nanoparticles Impact Biofilm Communities and Mussel Settlement

(2016) Jin-Long Yang et al.   Scientific Reports

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Evidencing the Impact of Coastal Contaminated Sediments on Mussels Through Pb Stable Isotopes Composition

(2015) Duc Huy Dang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bacterial Community Profiling of Plastic Litter in the Belgian Part of the North Sea

(2015) Caroline A. De Tender et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Phytoplankton community diversity is influenced by environmental factors in the coastal East China Sea

(2015) Zhifang Xu et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Pollution-induced community tolerance (PICT): towards an ecologically relevant risk assessment of chemicals in aquatic systems

(2015) Ahmed Tlili et al.   FRESHWATER BIOLOGY

The biogeography of the Plastisphere: implications for policy

(2015) Linda A Amaral-Zettler et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Microbial Surface Colonization and Biofilm Development in Marine Environments

(2015) Hongyue Dang et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Material properties of biofilms—a review of methods for understanding permeability and mechanics

(2015) Nicole Billings et al.   REPORTS ON PROGRESS IN PHYSICS

Bioremediation of contaminated marine sediments can enhance metal mobility due to changes of bacterial diversity

(2015) Viviana Fonti et al.   WATER RESEARCH

Nanosilver induces a non-culturable but metabolically active state in Pseudomonas aeruginosa

(2015) Alexa M. Königs et al.   Frontiers in Microbiology

Patterns of benthic bacterial diversity in coastal areas contaminated by heavy metals, polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)

(2015) Grazia Marina Quero et al.   Frontiers in Microbiology

FactoMineR: AnRPackage for Multivariate Analysis

(2015) Sébastien Lê et al.   Journal of Statistical Software

Antifouling Coatings Influence both Abundance and Community Structure of Colonizing Biofilms: a Case Study in the Northwestern Mediterranean Sea

(2014) Mercedes Camps et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relating metal bioavailability to risk assessment for aquatic species: Daliao River watershed, China

(2014) Shuping Han et al.   ENVIRONMENTAL POLLUTION

Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage

(2014) Lin-xing Chen et al.   ISME Journal

The dual role of microbes in corrosion

(2014) Nardy Kip et al.   ISME Journal

Selected metal ions protect Bacillus subtilis biofilms from erosion

(2014) S. Grumbein et al.   Metallomics

Bacterial and Archaeal Communities in Sediments of the North Chinese Marginal Seas

(2014) Jiwen Liu et al.   MICROBIAL ECOLOGY

In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system

(2014) On On Lee et al.   Scientific Reports

Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system

(2014) Wei Peng Zhang et al.   Scientific Reports

Hyperbaric biofilms on engineering surfaces formed in the deep sea

(2013) Alexandra Meier et al.   BIOFOULING

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

(2013) Alexis P Yelton et al.   BMC GENOMICS

Marine biofilms on artificial surfaces: structure and dynamics

(2013) Maria Salta et al.   ENVIRONMENTAL MICROBIOLOGY

Life in the “Plastisphere”: Microbial Communities on Plastic Marine Debris

(2013) Erik R. Zettler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bioavailability of copper in contaminated sediments assessed by a DGT approach and the uptake of copper by the aquatic plantMyriophyllum aquaticum

(2013) Amélie Caillat et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Biofilm development and enhanced stress resistance of a model, mixed-species community biofilm

(2013) Kai Wei Kelvin Lee et al.   ISME Journal

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

(2013) Terrence H Bell et al.   ISME Journal

Dynamics and fates of trace metals chronically input in a Mediterranean coastal zone impacted by a large urban area

(2013) B. Oursel et al.   MARINE POLLUTION BULLETIN

Central Role of Dynamic Tidal Biofilms Dominated by Aerobic Hydrocarbonoclastic Bacteria and Diatoms in the Biodegradation of Hydrocarbons in Coastal Mudflats

(2012) Frédéric Coulon et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulfate-reducing bacteria inhabiting natural corrosion deposits from marine steel structures

(2012) Sandrine Païssé et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The effect of substratum type, orientation and depth on the development of bacterial deep-sea biofilm communities grown on artificial substrata deployed in the Eastern Mediterranean

(2012) Nikoleta Bellou et al.   BIOFOULING

Pioneer marine biofilms on artificial surfaces including antifouling coatings immersed in two contrasting French Mediterranean coast sites

(2012) Jean-François Briand et al.   BIOFOULING

Characterization of the anaerobic microbial community in oil-polluted subtidal sediments: aromatic biodegradation potential after thePrestigeoil spill

(2012) Alejandro Acosta-González et al.   ENVIRONMENTAL MICROBIOLOGY

Protein expression from zooplankton communities in a metal contaminated NW mediterranean coastal ecosystem

(2012) Natacha Jean et al.   MARINE ENVIRONMENTAL RESEARCH

Impact of copper on the abundance and diversity of sulfate-reducing prokaryotes in two chilean marine sediments

(2012) Ludovic Besaury et al.   MARINE POLLUTION BULLETIN

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Stratification of Archaea in the Deep Sediments of a Freshwater Meromictic Lake: Vertical Shift from Methanogenic to Uncultured Archaeal Lineages

(2012) Guillaume Borrel et al.   PLoS One

Recruitment of Members from the Rare Biosphere of Marine Bacterioplankton Communities after an Environmental Disturbance

(2011) Johanna Sjöstedt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Impact of atmospheric deposition of anthropogenic and natural trace metals on Northwestern Mediterranean surface waters: A box model assessment

(2011) Lars-Eric Heimbürger et al.   ENVIRONMENTAL POLLUTION

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

(2011) Philippe N Bertin et al.   ISME Journal

Study of the spatial and historical distribution of sediment inorganic contamination in the Toulon bay (France)

(2011) Erwan Tessier et al.   MARINE POLLUTION BULLETIN

Should we stay or should we go: mechanisms and ecological consequences for biofilm dispersal

(2011) Diane McDougald et al.   NATURE REVIEWS MICROBIOLOGY

Marine ecosystems’ responses to climatic and anthropogenic forcings in the Mediterranean

(2011) X. Durrieu de Madron et al.   PROGRESS IN OCEANOGRAPHY

Economic impact of biofouling on a naval surface ship

(2010) M. P. Schultz et al.   BIOFOULING

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Environmental transcriptome analysis reveals physiological differences between biofilm and planktonic modes of life of the iron oxidizing bacteria Leptospirillum spp. in their natural microbial community

(2010) Mercedes Moreno-Paz et al.   BMC GENOMICS

Marine pollution from antifouling paint particles

(2010) Andrew Turner   MARINE POLLUTION BULLETIN

The biofilm matrix

(2010) Hans-Curt Flemming et al.   NATURE REVIEWS MICROBIOLOGY

Exopolysaccharides favor the survival of Erwinia amylovora under copper stress through different strategies

(2010) Mónica Ordax et al.   RESEARCH IN MICROBIOLOGY

An Alternative Polyamine Biosynthetic Pathway Is Widespread in Bacteria and Essential for Biofilm Formation inVibrio cholerae

(2009) Jeongmi Lee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Microbial diversity in polluted harbor sediments I: Bacterial community assessment based on four clone libraries of 16S rDNA

(2007) Wen Zhang et al.   ESTUARINE COASTAL AND SHELF SCIENCE