Metagenomic Analysis of Zinc Surface–Associated Marine Biofilms

Anti-biofilm effect of a butenolide/polymer coating and metatranscriptomic analyses

(2018) Wei Ding et al.   BIOFOULING

Microbial Community Composition of Tap Water and Biofilms Treated with or without Copper–Silver Ionization

(2018) Anke Stüken et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Marked Succession of Cyanobacterial Communities Following Glacier Retreat in the High Arctic

(2018) Igor S. Pessi et al.   MICROBIAL ECOLOGY

Distinct Bloom Dynamics of Toxic and Non-toxic Microcystis (Cyanobacteria) Subpopulations in Hoedong Reservoir (Korea)

(2017) Bum Soo Park et al.   MICROBIAL ECOLOGY

Spatial and temporal analogies in microbial communities in natural drinking water biofilms

(2017) I. Douterelo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Comparative Evaluation of Four Bacteria-Specific Primer Pairs for 16S rRNA Gene Surveys

(2017) Sofie Thijs et al.   Frontiers in Microbiology

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters

(2017) Celine C. Lesaulnier et al.   Microbiome

Zinc-Induced Transposition of Insertion Sequence Elements Contributes to Increased Adaptability of Cupriavidus metallidurans

(2016) Joachim Vandecraen et al.   Frontiers in Microbiology

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

(2015) Chandan Pal et al.   BMC GENOMICS

Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool

(2015) Weipeng Zhang et al.   ENVIRONMENTAL MICROBIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Molecular Techniques Revealed Highly Diverse Microbial Communities in Natural Marine Biofilms on Polystyrene Dishes for Invertebrate Larval Settlement

(2014) On On Lee et al.   MICROBIAL ECOLOGY

Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system

(2014) Wei Peng Zhang et al.   Scientific Reports

Physiology and molecular biology of aquatic cyanobacteria

(2014) George S. Bullerjahn et al.   Frontiers in Microbiology

Hyperbaric biofilms on engineering surfaces formed in the deep sea

(2013) Alexandra Meier et al.   BIOFOULING

Zinc as an agent for the prevention of biofilm formation by pathogenic bacteria

(2013) C. Wu et al.   JOURNAL OF APPLIED MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The effect of substratum type, orientation and depth on the development of bacterial deep-sea biofilm communities grown on artificial substrata deployed in the Eastern Mediterranean

(2012) Nikoleta Bellou et al.   BIOFOULING

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Effects of zinc on microalgal biofilms in intertidal and subtidal habitats

(2011) M. Mayer-Pinto et al.   BIOFOULING

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Bacterial community succession and chemical profiles of subtidal biofilms in relation to larval settlement of the polychaete Hydroides elegans

(2010) Hong Chun Chung et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm

(2009) William J Brazelton et al.   ISME Journal

A Novel Insertion Sequence Derepresses Efflux Pump Expression and Preadapts Pseudomonas putida S12 for Extreme Solvent Stress

(2009) X. Sun et al.   JOURNAL OF BACTERIOLOGY

Pfam 10 years on: 10 000 families and still growing

(2008) S. J. Sammut et al.   BRIEFINGS IN BIOINFORMATICS

Bacterial adhesion and biofilms on surfaces

(2008) Trevor Roger Garrett et al.   Progress in Natural Science-Materials International