The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park

Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs

(2016) Jacob P. Beam et al.   Frontiers in Microbiology

Pyrobaculum yellowstonensis Strain WP30 Respires on Elemental Sulfur and/or Arsenate in Circumneutral Sulfidic Geothermal Sediments of Yellowstone National Park

(2015) Z. J. Jay et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales

(2015) Zackary J. Jay et al.   Biology Direct

Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function

(2015) William P. Inskeep et al.   Frontiers in Microbiology

Carbon Dioxide Fixation by Metallosphaera yellowstonensis and Acidothermophilic Iron-Oxidizing Microbial Communities from Yellowstone National Park

(2014) R. M. Jennings et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem

(2014) William Inskeep   Frontiers in Microbiology

Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities

(2013) Z. J. Jay et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

In situanalysis of oxygen consumption and diffusive transport in high-temperature acidic iron-oxide microbial mats

(2013) Hans C. Bernstein et al.   ENVIRONMENTAL MICROBIOLOGY

Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park

(2013) Jacob P Beam et al.   ISME Journal

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Archaeal and bacterial communities in three alkaline hot springs in Heart Lake Geyser Basin, Yellowstone National Park

(2013) Kara Bowen De León et al.   Frontiers in Microbiology

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry

(2013) William P. Inskeep et al.   Frontiers in Microbiology

Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages

(2013) Cristina Takacs-Vesbach et al.   Frontiers in Microbiology

Characterization of the Type III sulfide:quinone oxidoreductase from Caldivirga maquilingensis and its membrane binding

(2012) Andrea M. Lencina et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2

(2012) Martin Wu et al.   BIOINFORMATICS

Microbial community structure and sulfur biogeochemistry in mildly-acidic sulfidic geothermal springs in Yellowstone National Park

(2012) R.E. Macur et al.   Geobiology

Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park

(2012) Mark A Kozubal et al.   ISME Journal

Complete Genome Sequence of Strain 1860, a Crenarchaeon of the Genus Pyrobaculum Able To Grow with Various Electron Acceptors

(2012) A. V. Mardanov et al.   JOURNAL OF BACTERIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Coordinating Environmental Genomics and Geochemistry Reveals Metabolic Transitions in a Hot Spring Ecosystem

(2012) Wesley D. Swingley et al.   PLoS One

Fine-Scale Distribution Patterns of Synechococcus Ecological Diversity in Microbial Mats of Mushroom Spring, Yellowstone National Park

(2011) Eric D. Becraft et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mauve Assembly Metrics

(2011) Aaron E. Darling et al.   BIOINFORMATICS

Hydrothermal ecotones and streamer biofilm communities in the Lower Geyser Basin, Yellowstone National Park

(2011) D'Arcy R Meyer-Dombard et al.   ENVIRONMENTAL MICROBIOLOGY

Complete Genome Sequence of "Vulcanisaeta moutnovskia" Strain 768-28, a Novel Member of the Hyperthermophilic Crenarchaeal Genus Vulcanisaeta

(2011) V. M. Gumerov et al.   JOURNAL OF BACTERIOLOGY

The Complete Genome Sequence of Thermoproteus tenax: A Physiologically Versatile Member of the Crenarchaeota

(2011) Bettina Siebers et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Identification of Missing Genes and Enzymes for Autotrophic Carbon Fixation in Crenarchaeota

(2010) W. H. Ramos-Vera et al.   JOURNAL OF BACTERIOLOGY

Autotrophic carbon fixation in archaea

(2010) Ivan A. Berg et al.   NATURE REVIEWS MICROBIOLOGY

Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function

(2010) William P. Inskeep et al.   PLoS One

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

IMG ER: a system for microbial genome annotation expert review and curation

(2009) Victor M. Markowitz et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Autotrophic Carbon Dioxide Assimilation in Thermoproteales Revisited

(2009) W. H. Ramos-Vera et al.   JOURNAL OF BACTERIOLOGY

Sulfur geochemistry of hydrothermal waters in Yellowstone National Park: IV Acid–sulfate waters

(2008) D. Kirk Nordstrom et al.   APPLIED GEOCHEMISTRY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Transcriptional Map of Respiratory Versatility in the Hyperthermophilic CrenarchaeonPyrobaculum aerophilum

(2008) Aaron E. Cozen et al.   JOURNAL OF BACTERIOLOGY

Comprehensive Analysis of Archaeal tRNA Genes Reveals Rapid Increase of tRNA Introns in the Order Thermoproteales

(2008) Junichi Sugahara et al.   MOLECULAR BIOLOGY AND EVOLUTION

Functional metagenomic profiling of nine biomes

(2008) Elizabeth A. Dinsdale et al.   NATURE

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

(2008) P. P. Chan et al.   NUCLEIC ACIDS RESEARCH

Reversible interconversion of carbon dioxide and formate by an electroactive enzyme

(2008) T. Reda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The archaebacterial origin of eukaryotes

(2008) C. J. Cox et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA