Single TRAM domain RNA-binding proteins in A rchaea : functional insight from Ctr3 from the Antarctic methanogen M ethanococcoides burtonii

Solution structure of the RNA-binding cold-shock domain of theChlamydomonas reinhardtiiNAB1 protein and insights into RNA recognition

(2015) Anne L. Sawyer et al.   BIOCHEMICAL JOURNAL

On the concept of a psychrophile

(2015) Ricardo Cavicchioli   ISME Journal

Microbial ecology of Antarctic aquatic systems

(2015) Ricardo Cavicchioli   NATURE REVIEWS MICROBIOLOGY

Specificity and nonspecificity in RNA–protein interactions

(2015) Eckhard Jankowsky et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Transcriptome structure variability in Saccharomyces cerevisiae strains determined with a newly developed assembly software

(2014) Alessandro Sardu et al.   BMC GENOMICS

Molecular basis for the wide range of affinity found in Csr/Rsm protein–RNA recognition

(2014) Olivier Duss et al.   NUCLEIC ACIDS RESEARCH

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

Psychrophiles

(2013) Khawar S. Siddiqui et al.   Annual Review of Earth and Planetary Sciences

The impact of genomic variability on gene expression in environmentalSaccharomyces cerevisiaestrains

(2013) Laura Treu et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial adaptation to cold

(2013) C. Barria et al.   MICROBIOLOGY-SGM

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Hidden specificity in an apparently nonspecific RNA-binding protein

(2013) Ulf-Peter Guenther et al.   NATURE

The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain

(2012) Stefano Campanaro et al.   BMC GENOMICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer

(2011) Oliver Pilak et al.   ENVIRONMENTAL MICROBIOLOGY

Defining the response of a microorganism to temperatures that span its complete growth temperature range (−2°C to 28°C) using multiplex quantitative proteomics

(2011) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

RNA remodeling and gene regulation by cold shock proteins

(2011) Sangita Phadtare et al.   RNA Biology

Unwinding activity of cold shock proteins and RNA metabolism

(2011) Sangita Phadtare   RNA Biology

Eukaryotic cold shock domain proteins: highly versatile regulators of gene expression

(2010) Marija Mihailovich et al.   BIOESSAYS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

The RNA polymerase subunits E/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA

(2010) Davide De Francisci et al.   ENVIRONMENTAL MICROBIOLOGY

Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii

(2010) S. Campanaro et al.   ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation

(2009) Michelle A Allen et al.   ISME Journal

Psychrobacter arcticus 273-4 Uses Resource Efficiency and Molecular Motion Adaptations for Subzero Temperature Growth

(2009) P. W. Bergholz et al.   JOURNAL OF BACTERIOLOGY

Global Proteomic Analysis of the Insoluble, Soluble, and Supernatant Fractions of the Psychrophilic ArchaeonMethanococcoides burtoniiPart I: The Effect of Growth Temperature

(2009) Timothy J. Williams et al.   JOURNAL OF PROTEOME RESEARCH

The integrated microbial genomes system: an expanding comparative analysis resource

(2009) Victor M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

tRNA's modifications bring order to gene expression

(2008) Estella M Gustilo et al.   CURRENT OPINION IN MICROBIOLOGY

Discovering Sequence Motifs with Arbitrary Insertions and Deletions

(2008) Martin C. Frith et al.   PLoS Computational Biology