The impact of genomic variability on gene expression in environmentalSaccharomyces cerevisiaestrains

Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae

(2012) Andrea Hodgins-Davis et al.   Genome Biology and Evolution

Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments

(2012) B. Dunn et al.   GENOME RESEARCH

A Mitochondrial Pyruvate Carrier Required for Pyruvate Uptake in Yeast, Drosophila, and Humans

(2012) D. K. Bricker et al.   SCIENCE

Whole-Genome Sequencing of Sake Yeast Saccharomyces cerevisiae Kyokai no. 7

(2011) T. Akao et al.   DNA RESEARCH

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

RATT: Rapid Annotation Transfer Tool

(2011) Thomas D. Otto et al.   NUCLEIC ACIDS RESEARCH

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

(2011) D. Libkind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-Genome Comparison Reveals Novel Genetic Elements That Characterize the Genome of Industrial Strains of Saccharomyces cerevisiae

(2011) Anthony R. Borneman et al.   PLoS Genetics

Trait Variation in Yeast Is Defined by Population History

(2011) Jonas Warringer et al.   PLoS Genetics

Mugsy: fast multiple alignment of closely related whole genomes

(2010) Samuel V. Angiuoli et al.   BIOINFORMATICS

Breeding of a Low Pyruvate-Producing Sake Yeast by Isolation of a Mutant Resistant to Ethyl α-Transcyanocinnamate, an Inhibitor of Mitochondrial Pyruvate Transport

(2010) Kenta HORIE et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Oleic acid and ergosterol supplementation mitigates oxidative stress in wine strains of Saccharomyces cerevisiae

(2010) Sara Landolfo et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

FSY1, a horizontally transferred gene in the Saccharomyces cerevisiae EC1118 wine yeast strain, encodes a high-affinity fructose/H+ symporter

(2010) V. Galeote et al.   MICROBIOLOGY-SGM

Genetic analysis of variation in transcription factor binding in yeast

(2010) Wei Zheng et al.   NATURE

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

PASS: a program to align short sequences

(2009) D. Campagna et al.   BIOINFORMATICS

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Dynamics of the yeast transcriptome during wine fermentation reveals a novel fermentation stress response

(2009) Virginia D. Marks et al.   FEMS YEAST RESEARCH

Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production

(2009) J. L. Argueso et al.   GENOME RESEARCH

Roles of Trans and Cis Variation in Yeast Intraspecies Evolution of Gene Expression

(2009) Huang-Mo Sung et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae

(2009) Joseph Schacherer et al.   NATURE

Population genomics of domestic and wild yeasts

(2009) Gianni Liti et al.   NATURE

Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118

(2009) M. Novo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability

(2009) M. D. Vinces et al.   SCIENCE

Evolving gene expression: from G to E to G×E

(2009) Andrea Hodgins-Davis et al.   TRENDS IN ECOLOGY & EVOLUTION

Identification of Genes Affecting Hydrogen Sulfide Formation in Saccharomyces cerevisiae

(2008) A. L. Linderholm et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Ehrlich Pathway for Fusel Alcohol Production: a Century of Research on Saccharomyces cerevisiae Metabolism

(2008) L. A. Hazelwood et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates

(2008) Stefano Campanaro et al.   BMC EVOLUTIONARY BIOLOGY

Comparative genomics of wild type yeast strains unveils important genome diversity

(2008) Laura Carreto et al.   BMC GENOMICS

Comparative genome analysis of aSaccharomyces cerevisiaewine strain

(2008) Anthony R. Borneman et al.   FEMS YEAST RESEARCH