Single cell transcriptomics reveals lineage trajectory of retinal ganglion cells in wild-type and Atoh7-null retinas

Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures

(2020) Akshayalakshmi Sridhar et al.   Cell Reports

Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development

(2020) Yufeng Lu et al.   DEVELOPMENTAL CELL

Two new genetically modified mouse alleles labeling distinct phases of retinal ganglion cell development by fluorescent proteins

(2020) Yichen Ge et al.   DEVELOPMENTAL DYNAMICS

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification

(2019) Brian S. Clark et al.   NEURON

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

Single-cell transcriptional logic of cell-fate specification and axon guidance in early-born retinal neurons

(2019) Quentin Lo Giudice et al.   DEVELOPMENT

A single‐cell transcriptome atlas of the adult human retina

(2019) Samuel W Lukowski et al.   EMBO JOURNAL

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration

(2019) Madhvi Menon et al.   Nature Communications

Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes

(2019) Nicholas M. Tran et al.   NEURON

Phosphorylation states change Otx2 activity for cell proliferation and patterning in the Xenopus embryo

(2018) Yumeko Satou et al.   DEVELOPMENT

Prdm13 is required for Ebf3+ amacrine cell formation in the retina

(2018) Noah B. Goodson et al.   DEVELOPMENTAL BIOLOGY

The dynamics of native Atoh7 protein expression during mouse retinal histogenesis, revealed with a new antibody

(2018) Joel B. Miesfeld et al.   GENE EXPRESSION PATTERNS

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes

(2018) Bruce A. Rheaume et al.   Nature Communications

Elevated expression of human bHLH factor ATOH7 accelerates cell cycle progression of progenitors and enhances production of avian retinal ganglion cells

(2018) Xiang-Mei Zhang et al.   Scientific Reports

Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration

(2018) Goran Tomic et al.   Cell Stem Cell

Tumor suppressors BTG1 and BTG2: Beyond growth control

(2018) Laurensia Yuniati et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Novel Regulatory Mechanisms for the SoxC Transcriptional Network Required for Visual Pathway Development

(2017) Kun-Che Chang et al.   JOURNAL OF NEUROSCIENCE

SoxC Transcription Factors Promote Contralateral Retinal Ganglion Cell Differentiation and Axon Guidance in the Mouse Visual System

(2017) Takaaki Kuwajima et al.   NEURON

In situ click chemistry generation of cyclooxygenase-2 inhibitors

(2017) Atul Bhardwaj et al.   Nature Communications

Math5 (Atoh7) gene dosage limits retinal ganglion cell genesis

(2017) Lev Prasov et al.   NEUROREPORT

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

(2016) Karthik Shekhar et al.   CELL

Hedgehog signalling

(2016) Raymond Teck Ho Lee et al.   DEVELOPMENT

Cell autonomous and nonautonomous requirements for Delltalike1 during early mouse retinal neurogenesis

(2016) Amy N. Riesenberg et al.   DEVELOPMENTAL DYNAMICS

Lhx2 Is an Essential Factor for Retinal Gliogenesis and Notch Signaling

(2016) Jimmy de Melo et al.   JOURNAL OF NEUROSCIENCE

Diffusion pseudotime robustly reconstructs lineage branching

(2016) Laleh Haghverdi et al.   NATURE METHODS

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

(2016) I. Tirosh et al.   SCIENCE

The Ciliary Margin Zone of the Mammalian Retina Generates Retinal Ganglion Cells

(2016) Florencia Marcucci et al.   Cell Reports

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

A Conserved Regulatory Logic Controls Temporal Identity in Mouse Neural Progenitors

(2015) Pierre Mattar et al.   NEURON

Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate

(2015) Fuguo Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Notch signaling differentially regulates Atoh7 and Neurog2 in the distal mouse retina

(2014) K. A. Maurer et al.   DEVELOPMENT

BTG2: A rising star of tumor suppressors (Review)

(2014) BIJING MAO et al.   INTERNATIONAL JOURNAL OF ONCOLOGY

Intrinsically different retinal progenitor cells produce specific types of progeny

(2014) Connie Cepko   NATURE REVIEWS NEUROSCIENCE

Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development

(2014) Darshan Sapkota et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The early retinal progenitor-expressed gene Sox11 regulates the timing of the differentiation of retinal cells

(2013) A. Usui et al.   DEVELOPMENT

Blimp1 (Prdm1) prevents re-specification of photoreceptors into retinal bipolar cells by restricting competence

(2013) Joseph A. Brzezinski et al.   DEVELOPMENTAL BIOLOGY

Otx2 and Onecut1 Promote the Fates of Cone Photoreceptors and Horizontal Cells and Repress Rod Photoreceptors

(2013) Mark M. Emerson et al.   DEVELOPMENTAL CELL

Bhlhb5is required for the subtype development of retinal amacrine and bipolar cells in mice

(2013) Liang Huang et al.   DEVELOPMENTAL DYNAMICS

Transcription Factors SOX4 and SOX11 Function Redundantly to Regulate the Development of Mouse Retinal Ganglion Cells

(2013) Ying Jiang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Lhx2 Balances Progenitor Maintenance with Neurogenic Output and Promotes Competence State Progression in the Developing Retina

(2013) P. J. Gordon et al.   JOURNAL OF NEUROSCIENCE

Conserved microRNA pathway regulates developmental timing of retinal neurogenesis

(2013) A. La Torre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Intrinsic control of mammalian retinogenesis

(2012) Mengqing Xiang   CELLULAR AND MOLECULAR LIFE SCIENCES

GADD45 Proteins: Central Players in Tumorigenesis

(2012) R. E. Tamura et al.   CURRENT MOLECULAR MEDICINE

Math5 defines the ganglion cell competence state in a subpopulation of retinal progenitor cells exiting the cell cycle

(2012) Joseph A. Brzezinski et al.   DEVELOPMENTAL BIOLOGY

Overlapping expression patterns and redundant roles for AP-2 transcription factors in the developing mammalian retina

(2012) Erin A. Bassett et al.   DEVELOPMENTAL DYNAMICS

Forkhead box N4 (Foxn4) activates Dll4-Notch signaling to suppress photoreceptor cell fates of early retinal progenitors

(2012) H. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates

(2012) B. P. Hafler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell fate determination in the vertebrate retina

(2012) Erin A. Bassett et al.   TRENDS IN NEUROSCIENCES

Ascl1 expression defines a subpopulation of lineage-restricted progenitors in the mammalian retina

(2011) Joseph A. Brzezinski et al.   DEVELOPMENT

Onecut 1 and Onecut 2 are potential regulators of mouse retinal development

(2011) Fuguo Wu et al.   JOURNAL OF COMPARATIVE NEUROLOGY

RNAscope

(2011) Fay Wang et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Brn-3b inhibits generation of amacrine cells by binding to and negatively regulating DLX1/2 in developing retina

(2011) L. Feng et al.   NEUROSCIENCE

Reconstruction of rat retinal progenitor cell lineages in vitro reveals a surprising degree of stochasticity in cell fate decisions

(2010) F. L. A. F. Gomes et al.   DEVELOPMENT

Neurog2 controls the leading edge of neurogenesis in the mammalian retina

(2010) Robert B. Hufnagel et al.   DEVELOPMENTAL BIOLOGY

Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina

(2010) Anand Swaroop et al.   NATURE REVIEWS NEUROSCIENCE

Overlapping spatiotemporal patterns of regulatory gene expression are required for neuronal progenitors to specify retinal ganglion cell fate

(2010) Takae Kiyama et al.   VISION RESEARCH

MATH5 controls the acquisition of multiple retinal cell fates

(2010) Liang Feng et al.   Molecular Brain

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Defining retinal progenitor cell competence in Xenopus laevis by clonal analysis

(2009) L. L. Wong et al.   DEVELOPMENT

Epitope-tagging Math5 and Pou4f2: New tools to study retinal ganglion cell development in the mouse

(2009) Xueyao Fu et al.   DEVELOPMENTAL DYNAMICS

Acheate-scute like 1 (Ascl1) is required for normal delta-like (Dll) gene expression and notch signaling during retinal development

(2009) Branden R. Nelson et al.   DEVELOPMENTAL DYNAMICS

Progenitor cell proliferation in the retina is dependent on Notch-independent Sonic hedgehog/Hes1 activity

(2009) Dana S. Wall et al.   JOURNAL OF CELL BIOLOGY

Distinct Effects of Hedgehog Signaling on Neuronal Fate Specification and Cell Cycle Progression in the Embryonic Mouse Retina

(2009) K. Sakagami et al.   JOURNAL OF NEUROSCIENCE

Rbpj Cell Autonomous Regulation of Retinal Ganglion Cell and Cone Photoreceptor Fates in the Mouse Retina

(2009) A. N. Riesenberg et al.   JOURNAL OF NEUROSCIENCE

The structure of SHH in complex with HHIP reveals a recognition role for the Shh pseudo active site in signaling

(2009) Ivan Bosanac et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Notch activity in the nervous system: to switch or not switch?

(2009) Elise Cau et al.   Neural Development

Rewiring the retinal ganglion cell gene regulatory network: Neurod1 promotes retinal ganglion cell fate in the absence of Math5

(2008) C.-A. Mao et al.   DEVELOPMENT

ISL1 and BRN3B co-regulate the differentiation of murine retinal ganglion cells

(2008) L. Pan et al.   DEVELOPMENT

Hedgehog: functions and mechanisms

(2008) M. Varjosalo et al.   GENES & DEVELOPMENT

Notch: from neural development to neurological disorders

(2008) Justin D. Lathia et al.   JOURNAL OF NEUROCHEMISTRY

A Comprehensive Negative Regulatory Program Controlled by Brn3b to Ensure Ganglion Cell Specification from Multipotential Retinal Precursors

(2008) F. Qiu et al.   JOURNAL OF NEUROSCIENCE

Dynamic Notch signaling in neural progenitor cells and a revised view of lateral inhibition

(2008) Ryoichiro Kageyama et al.   NATURE NEUROSCIENCE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Individual Retinal Progenitor Cells Display Extensive Heterogeneity of Gene Expression

(2008) Jeffrey M. Trimarchi et al.   PLoS One

Gene-regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2

(2008) X. Mu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA