Single-cell transcriptional logic of cell-fate specification and axon guidance in early-born retinal neurons

A Retino-retinal Projection Guided by Unc5c Emerged in Species with Retinal Waves

(2019) Verónica Murcia-Belmonte et al.   CURRENT BIOLOGY

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification

(2019) Brian S. Clark et al.   NEURON

Single-Cell Transcriptomics Meets Lineage Tracing

(2018) Lennart Kester et al.   Cell Stem Cell

Distinct timing of neurogenesis of ipsilateral and contralateral retinal ganglion cells

(2018) Florencia Marcucci et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Sonic Hedgehog Is a Remotely Produced Cue that Controls Axon Guidance Trans-axonally at a Midline Choice Point

(2018) Jimmy Peng et al.   NEURON

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes

(2018) Bruce A. Rheaume et al.   Nature Communications

IGFBPL1 Regulates Axon Growth through IGF-1-mediated Signaling Cascades

(2018) Chenying Guo et al.   Scientific Reports

Heterogeneous combinatorial expression of Hoxd genes in single cells during limb development

(2018) P. J. Fabre et al.   BMC BIOLOGY

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Single-cell transcriptome analysis of lineage diversity in high-grade glioma

(2018) Jinzhou Yuan et al.   Genome Medicine

Cone Genesis Tracing by the Chrnb4 -EGFP Mouse Line: Evidences of Cellular Material Fusion after Cone Precursor Transplantation

(2017) Sarah Decembrini et al.   MOLECULAR THERAPY

Single-cell mRNA quantification and differential analysis with Census

(2017) Xiaojie Qiu et al.   NATURE METHODS

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Diverse Central Projection Patterns of Retinal Ganglion Cells

(2017) Emily M. Martersteck et al.   Cell Reports

Glycolytic reliance promotes anabolism in photoreceptors

(2017) Yashodhan Chinchore et al.   eLife

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics

(2016) Karthik Shekhar et al.   CELL

Disentangling neural cell diversity using single-cell transcriptomics

(2016) Jean-Francois Poulin et al.   NATURE NEUROSCIENCE

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

(2016) Bosiljka Tasic et al.   NATURE NEUROSCIENCE

Sequential transcriptional waves direct the differentiation of newborn neurons in the mouse neocortex

(2016) L. Telley et al.   SCIENCE

The Ciliary Margin Zone of the Mammalian Retina Generates Retinal Ganglion Cells

(2016) Florencia Marcucci et al.   Cell Reports

Metabolic reprogramming during neuronal differentiation from aerobic glycolysis to neuronal oxidative phosphorylation

(2016) Xinde Zheng et al.   eLife

The Types of Retinal Ganglion Cells: Current Status and Implications for Neuronal Classification

(2015) Joshua R. Sanes et al.   Annual Review of Neuroscience

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

(2015) Evan Z. Macosko et al.   CELL

Roles of histone H3K27 trimethylase Ezh2 in retinal proliferation and differentiation

(2015) Atsumi Iida et al.   Developmental Neurobiology

A Conserved Regulatory Logic Controls Temporal Identity in Mouse Neural Progenitors

(2015) Pierre Mattar et al.   NEURON

Single-cell transcriptomics reveals receptor transformations during olfactory neurogenesis

(2015) N. K. Hanchate et al.   SCIENCE

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE

Asymmetric apportioning of aged mitochondria between daughter cells is required for stemness

(2015) P. Katajisto et al.   SCIENCE

Reconciling competence and transcriptional hierarchies with stochasticity in retinal lineages

(2014) Henrik Boije et al.   CURRENT OPINION IN NEUROBIOLOGY

Protocadherin-17 Mediates Collective Axon Extension by Recruiting Actin Regulator Complexes to Interaxonal Contacts

(2014) Shuichi Hayashi et al.   DEVELOPMENTAL CELL

Retinofugal projections in the mouse

(2014) Lawrence P. Morin et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Intrinsically different retinal progenitor cells produce specific types of progeny

(2014) Connie Cepko   NATURE REVIEWS NEUROSCIENCE

Developmentally Regulated Subnuclear Genome Reorganization Restricts Neural Progenitor Competence in Drosophila

(2013) Minoree Kohwi et al.   CELL

Otx2 and Onecut1 Promote the Fates of Cone Photoreceptors and Horizontal Cells and Repress Rod Photoreceptors

(2013) Mark M. Emerson et al.   DEVELOPMENTAL CELL

A smart local moving algorithm for large-scale modularity-based community detection

(2013) Ludo Waltman et al.   EUROPEAN PHYSICAL JOURNAL B

Ten-m2 Is Required for the Generation of Binocular Visual Circuits

(2013) T. R. Young et al.   JOURNAL OF NEUROSCIENCE

Down Syndrome Cell Adhesion Molecule (DSCAM) Associates with Uncoordinated-5C (UNC5C) in Netrin-1-mediated Growth Cone Collapse

(2012) Anish A. Purohit et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates

(2012) B. P. Hafler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell fate determination in the vertebrate retina

(2012) Erin A. Bassett et al.   TRENDS IN NEUROSCIENCES

Transcription Factor Foxd1 Is Required for the Specification of the Temporal Retina in Mammals

(2011) M. I. Carreres et al.   JOURNAL OF NEUROSCIENCE

Transgenic Mice Reveal Unexpected Diversity of On-Off Direction-Selective Retinal Ganglion Cell Subtypes and Brain Structures Involved in Motion Processing

(2011) M. Rivlin-Etzion et al.   JOURNAL OF NEUROSCIENCE

Zic2 regulates the expression of Sert to modulate eye-specific refinement at the visual targets

(2010) Cristina García-Frigola et al.   EMBO JOURNAL

Segregation of Ipsilateral Retinal Ganglion Cell Axons at the Optic Chiasm Requires the Shh Receptor Boc

(2010) P. J. Fabre et al.   JOURNAL OF NEUROSCIENCE

Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex

(2010) J. D. Pereira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Robo2 is required for Slit-mediated intraretinal axon guidance

(2009) Hannah Thompson et al.   DEVELOPMENTAL BIOLOGY

Specificity and Sufficiency of EphB1 in Driving the Ipsilateral Retinal Projection

(2009) T. J. Petros et al.   JOURNAL OF NEUROSCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Development and diversification of retinal amacrine interneurons at single cell resolution

(2009) T. J. Cherry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Retinal Axon Growth at the Optic Chiasm: To Cross or Not to Cross

(2008) Timothy J. Petros et al.   Annual Review of Neuroscience

Roles of Ephrin-As and Structured Activity in the Development of Functional Maps in the Superior Colliculus

(2008) J. Cang et al.   JOURNAL OF NEUROSCIENCE

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Stem Cell Factor Functions as an Outgrowth-Promoting Factor to Enable Axon Exit from the Midline Intermediate Target

(2008) Bryan B. Gore et al.   NEURON

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Individual Retinal Progenitor Cells Display Extensive Heterogeneity of Gene Expression

(2008) Jeffrey M. Trimarchi et al.   PLoS One