Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome
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Title
Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome
Authors
Keywords
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Journal
Nature Communications
Volume 12, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2021-02-01
DOI
10.1038/s41467-020-20578-2
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Note: Only part of the references are listed.- Predicting Splicing from Primary Sequence with Deep Learning
- (2019) Kishore Jaganathan et al. CELL
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- (2019) Ei-Wen Yang et al. Nature Communications
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- (2019) Karthik A. Jagadeesh et al. NATURE GENETICS
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- (2018) Ronald A. Panganiban et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
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- (2018) Liang Ma et al. Scientific Reports
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- (2018) Towfique Raj et al. NATURE GENETICS
- ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
- (2018) Diego Garrido-Martín et al. PLoS Computational Biology
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- (2018) Sarah M. Urbut et al. NATURE GENETICS
- CancerSplicingQTL: a database for genome-wide identification of splicing QTLs in human cancer
- (2018) Jianbo Tian et al. NUCLEIC ACIDS RESEARCH
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- (2017) Kyriaki Michailidou et al. NATURE
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- (2017) Florence Demenais et al. NATURE GENETICS
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- (2017) Andrew Anand Brown et al. NATURE GENETICS
- Annotation-free quantification of RNA splicing using LeafCutter
- (2017) Yang I. Li et al. NATURE GENETICS
- Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues
- (2017) Alejandro Reyes et al. NUCLEIC ACIDS RESEARCH
- The Encyclopedia of DNA elements (ENCODE): data portal update
- (2017) Carrie A Davis et al. NUCLEIC ACIDS RESEARCH
- Genome-wide identification of splicing QTLs in the human brain and their enrichment among schizophrenia-associated loci
- (2017) Atsushi Takata et al. Nature Communications
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- (2016) Eric L Van Nostrand et al. NATURE METHODS
- GSDMB induces an asthma phenotype characterized by increased airway responsiveness and remodeling without lung inflammation
- (2016) Sudipta Das et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA splicing is a primary link between genetic variation and disease
- (2016) Yang I. Li et al. SCIENCE
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- (2014) F. Hormozdiari et al. GENETICS
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- (2013) A. Battle et al. GENOME RESEARCH
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- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2013) Tuuli Lappalainen et al. NATURE
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