Synergistic association between cytochrome bd-encoded Proteiniphilum and reactive oxygen species (ROS)-scavenging methanogens in microaerobic-anaerobic digestion of lignocellulosic biomass

How superoxide reductases and flavodiiron proteins combat oxidative stress in anaerobes

(2019) Maria C. Martins et al.   FREE RADICAL BIOLOGY AND MEDICINE

Intermittent micro-aeration: New strategy to control volatile fatty acid accumulation in high organic loading anaerobic digestion

(2019) Duc Nguyen et al.   WATER RESEARCH

Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes

(2018) Panagiotis S. Adam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A little breath of fresh air into an anaerobic system: How microaeration facilitates anaerobic digestion process

(2018) Duc Nguyen et al.   BIOTECHNOLOGY ADVANCES

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Enhancement of acidogenic fermentation for volatile fatty acid production from food waste: Effect of redox potential and inoculum

(2016) Jun Yin et al.   BIORESOURCE TECHNOLOGY

Impacts of microaeration on the anaerobic digestion of corn straw and the microbial community structure

(2016) Shan-Fei Fu et al.   CHEMICAL ENGINEERING JOURNAL

How did life survive Earth's great oxygenation?

(2016) Woodward W Fischer et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Perspectives for microbial community composition in anaerobic digestion: from abundance and activity to connectivity

(2016) Jo De Vrieze et al.   ENVIRONMENTAL MICROBIOLOGY

Description of Proteiniphilum saccharofermentans sp. nov., Petrimonas mucosa sp. nov. and Fermentimonas caenicola gen. nov., sp. nov., isolated from mesophilic laboratory-scale biogas reactors, and emended description of the genus Proteiniphilum

(2016) Sarah Hahnke et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Anaerobic digestion of lignocellulosic biomass: Challenges and opportunities

(2015) Chayanon Sawatdeenarunat et al.   BIORESOURCE TECHNOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Resource recovery from used water: The manufacturing abilities of hydrogen-oxidizing bacteria

(2015) Silvio Matassa et al.   WATER RESEARCH

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Microbial community structure reveals how microaeration improves fermentation during anaerobic co-digestion of brown water and food waste

(2014) Jun Wei Lim et al.   BIORESOURCE TECHNOLOGY

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydrate-binding modules

(2013) Harry J Gilbert et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

(2013) Carina Sundberg et al.   FEMS MICROBIOLOGY ECOLOGY

Enhanced hydrolysis and methane yield by applying microaeration pretreatment to the anaerobic co-digestion of brown water and food waste

(2013) Jun Wei Lim et al.   WASTE MANAGEMENT

Hydrogen sulphide removal in the anaerobic digestion of sludge by micro-aerobic processes: pilot plant experience

(2013) M. Fdz.-Polanco et al.   WATER SCIENCE AND TECHNOLOGY

Carbon dioxide concentration dictates alternative methanogenic pathways in oil reservoirs

(2013) Daisuke Mayumi et al.   Nature Communications

Redox potential control and applications in microaerobic and anaerobic fermentations

(2012) Chen-Guang Liu et al.   BIOTECHNOLOGY ADVANCES

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Mechanism of oxygen detoxification by the surprisingly oxygen-tolerant hyperthermophilic archaeon, Pyrococcus furiosus

(2012) M. P. Thorgersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Redox outside the Box: Linking Extracellular Redox Remodeling with Intracellular Redox Metabolism

(2011) Ruma Banerjee   JOURNAL OF BIOLOGICAL CHEMISTRY

Reprogramming of Escherichia coli K-12 Metabolism during the Initial Phase of Transition from an Anaerobic to a Micro-Aerobic Environment

(2011) Eleanor W. Trotter et al.   PLoS One

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Aerobic growth at nanomolar oxygen concentrations

(2010) D. A. Stolper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Intermediary Metabolism in Protists: a Sequence-based View of Facultative Anaerobic Metabolism in Evolutionarily Diverse Eukaryotes

(2010) Michael L. Ginger et al.   PROTIST

Effect of pre-aeration and inoculum on the start-up of batch thermophilic anaerobic digestion of municipal solid waste

(2009) W. Charles et al.   BIORESOURCE TECHNOLOGY

Cellular Defenses against Superoxide and Hydrogen Peroxide

(2008) James A. Imlay   Annual Review of Biochemistry