Sigma Factor Modulation for Cyanobacterial Metabolic Engineering

Cyanobacterial sigma factors: Current and future applications for biotechnological advances

(2020) Amit Srivastava et al.   BIOTECHNOLOGY ADVANCES

A Novel Cyanobacterium Synechococcus elongatus PCC 11802 has Distinct Genomic and Metabolomic Characteristics Compared to its Neighbor PCC 11801

(2020) Damini Jaiswal et al.   Scientific Reports

Current knowledge and recent advances in understanding metabolism of the model cyanobacterium Synechocystis sp. PCC 6803

(2020) Lauren A. Mills et al.   BIOSCIENCE REPORTS

Application of combinatorial optimization strategies in synthetic biology

(2020) Gita Naseri et al.   Nature Communications

The circadian clock and darkness control natural competence in cyanobacteria

(2020) Arnaud Taton et al.   Nature Communications

Redefining fundamental concepts of transcription initiation in bacteria

(2020) Citlalli Mejía-Almonte et al.   NATURE REVIEWS GENETICS

Overlap of Promoter Recognition Specificity of Stress Response Sigma Factors SigD and SigH in Corynebacterium glutamicum ATCC 13032

(2019) Hana Dostálová et al.   Frontiers in Microbiology

Progress and perspective on cyanobacterial glycogen metabolism engineering

(2019) Guodong Luan et al.   BIOTECHNOLOGY ADVANCES

Synthetic Biology Toolkits for Metabolic Engineering of Cyanobacteria

(2019) Peng‐Fei Xia et al.   Biotechnology Journal

PHB is Produced from Glycogen Turn-over during Nitrogen Starvation in Synechocystis sp. PCC 6803

(2019) Moritz Koch et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Where to Begin? Sigma factors and the selectivity of transcription initiation in Bacteria

(2019) John D. Helmann   MOLECULAR MICROBIOLOGY

A Tripartite, Hierarchical Sigma Factor Cascade Promotes Hormogonium Development in the Filamentous Cyanobacterium Nostoc punctiforme

(2019) Alfonso Gonzalez et al.   mSphere

Envelope stress responses: balancing damage repair and toxicity

(2019) Angela M. Mitchell et al.   NATURE REVIEWS MICROBIOLOGY

Genetic and metabolic advances in the engineering of cyanobacteria

(2019) Dhanya Vijay et al.   CURRENT OPINION IN BIOTECHNOLOGY

Metabolic engineering of Synechocystis sp. PCC 6803 for the production of aromatic amino acids and derived phenylpropanoids

(2019) Laura Furelos Brey et al.   METABOLIC ENGINEERING

Recent advances in synthetic biology of cyanobacteria

(2018) Annesha Sengupta et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Tailoring cyanobacterial cell factory for improved industrial properties

(2018) Guodong Luan et al.   BIOTECHNOLOGY ADVANCES

Systems and synthetic biology for the biotechnological application of cyanobacteria

(2018) Martin Hagemann et al.   CURRENT OPINION IN BIOTECHNOLOGY

Transcriptome analysis of the cyanobacterium Synechocystis sp. PCC 6803 and mechanisms of photoinhibition tolerance under extreme high light conditions

(2018) Kenichi Ogawa et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative Targeted Proteomics of the Central Metabolism and Photosystems in SigE Mutant Strains of Synechocystis sp. PCC 6803

(2018) Yuma Tokumaru et al.   MOLECULES

Structural and Functional Insights into Bacillus subtilis Sigma Factor Inhibitor, CsfB

(2018) Santiago Martínez-Lumbreras et al.   STRUCTURE

Inactivation of group 2 σ factors upregulates production of transcription and translation machineries in the cyanobacterium Synechocystis sp. PCC 6803

(2018) Satu Koskinen et al.   Scientific Reports

Systematic Functional Analysis of Sigma (σ) Factors in the Phytopathogen Xanthomonas campestris Reveals Novel Roles in the Regulation of Virulence and Viability

(2018) Li-Yan Yang et al.   Frontiers in Microbiology

The alternative sigma factor SigF is a key player in the control of secretion mechanisms in Synechocystis sp. PCC 6803

(2018) Carlos Flores et al.   ENVIRONMENTAL MICROBIOLOGY

An RpaA-Dependent Sigma Factor Cascade Sets the Timing of Circadian Transcriptional Rhythms in Synechococcus elongatus

(2018) Kathleen E. Fleming et al.   Cell Reports

Glycogen, a major player for bacterial survival and awakening from dormancy

(2017) Alexander Klotz et al.   Future Microbiology

Characterization andin vivoregulon determination of an ECF sigma factor and its cognate anti-sigma factor inNostoc punctiforme

(2017) Nicole Bell et al.   MOLECULAR MICROBIOLOGY

Harnessing transcription for bioproduction in cyanobacteria

(2017) Karin Stensjö et al.   PHYSIOLOGIA PLANTARUM

Cluster-Level Relationships of Genes Involved in Carbon Metabolism in Synechocystis sp. PCC 6803: Development of a Novel Succinate-Producing Strain

(2017) Masahiro Takeya et al.   PLANT AND CELL PHYSIOLOGY

A novel constructed SPT15 mutagenesis library of Saccharomyces cerevisiae by using gTME technique for enhanced ethanol production

(2017) Ashraf A. M. M. El-Rotail et al.   AMB Express

Cyanobacterial chemical production

(2016) Anna E. Case et al.   JOURNAL OF BIOTECHNOLOGY

Using global transcription machinery engineering (gTME) to improve ethanol tolerance of Zymomonas mobilis

(2016) Furong Tan et al.   Microbial Cell Factories

Roles of Group 2 Sigma Factors in Acclimation of the CyanobacteriumSynechocystissp. PCC 6803 to Nitrogen Deficiency

(2016) Taras Antal et al.   PLANT AND CELL PHYSIOLOGY

Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan)

(2016) Lekha T. Pazhamala et al.   PLoS One

Evolution of a Sigma Factor: An All-In-One of Gene Duplication, Horizontal Gene Transfer, Purifying Selection, and Promoter Differentiation

(2016) Gamaliel López-Leal et al.   Frontiers in Microbiology

Engineering cyanobacteria for direct biofuel production from CO 2

(2015) Philipp Savakis et al.   CURRENT OPINION IN BIOTECHNOLOGY

Adaptive and acclimative responses of cyanobacteria to far-red light

(2015) Fei Gan et al.   ENVIRONMENTAL MICROBIOLOGY

One day of nitrogen starvation reveals the effect of sigE and rre37 overexpression on the expression of genes related to carbon and nitrogen metabolism in Synechocystis sp. PCC 6803

(2015) Yuka Nakaya et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

A carbon sink pathway increases carbon productivity in cyanobacteria

(2015) John W.K. Oliver et al.   METABOLIC ENGINEERING

Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2

(2015) Jingjie Yu et al.   Scientific Reports

Elucidation of Sigma Factor-Associated Networks in Pseudomonas aeruginosa Reveals a Modular Architecture with Limited and Function-Specific Crosstalk

(2015) Sebastian Schulz et al.   PLoS Pathogens

Genetic manipulation of a metabolic enzyme and a transcriptional regulator increasing succinate excretion from unicellular cyanobacterium

(2015) Takashi Osanai et al.   Frontiers in Microbiology

Comparative Analysis of the Primary Transcriptome of Synechocystis sp. PCC 6803

(2014) Matthias Kopf et al.   DNA RESEARCH

Overexpression of sigma factor SigB improves temperature and butanol tolerance of Synechocystis sp. PCC6803

(2014) Danuta Kaczmarzyk et al.   JOURNAL OF BIOTECHNOLOGY

Pathway-Level Acceleration of Glycogen Catabolism by a Response Regulator in the Cyanobacterium Synechocystis Species PCC 6803

(2014) T. Osanai et al.   PLANT PHYSIOLOGY

A Model for Sigma Factor Competition in Bacterial Cells

(2014) Marco Mauri et al.   PLoS Computational Biology

Oxidative stress and photoinhibition can be separated in the cyanobacterium Synechocystis sp. PCC 6803

(2013) Kaisa Hakkila et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The shikimate pathway: Review of amino acid sequence, function and three-dimensional structures of the enzymes

(2013) Rafia Mir et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Increased Bioplastic Production with an RNA Polymerase Sigma Factor SigE during Nitrogen Starvation in Synechocystis sp. PCC 6803

(2013) T. Osanai et al.   DNA RESEARCH

Design of orthogonal genetic switches based on a crosstalk map of  s, anti- s, and promoters

(2013) V. A. Rhodius et al.   Molecular Systems Biology

Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote

(2013) E. Strakova et al.   NUCLEIC ACIDS RESEARCH

Pleiotropic effect ofsigEover-expression on cell morphology, photosynthesis and hydrogen production inSynechocystissp. PCC 6803

(2013) Takashi Osanai et al.   PLANT JOURNAL

Slr0643, an S2P homologue, is essential for acid acclimation in the cyanobacterium Synechocystis sp. PCC 6803

(2012) X. Zhang et al.   MICROBIOLOGY-SGM

A constitutively expressed pair of rpoE2-chrR2 in Azospirillum brasilense Sp7 is required for survival under antibiotic and oxidative stress

(2012) N. Gupta et al.   MICROBIOLOGY-SGM

gTME for Improved Adaptation of Saccharomyces cerevisiae to Corn Cob Acid Hydrolysate

(2011) Hongmei Liu et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Structure of the Periplasmic Stress Response Protein CpxP

(2011) G. L. Thede et al.   JOURNAL OF BACTERIOLOGY

Genetic Engineering of Group 2 σ Factor SigE Widely Activates Expressions of Sugar Catabolic Genes inSynechocystisSpecies PCC 6803

(2011) Takashi Osanai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Response Regulator Rre37 and an RNA Polymerase Sigma Factor SigE Represent Two Parallel Pathways to Activate Sugar Catabolism in a Cyanobacterium Synechocystis sp. PCC 6803

(2011) Miyuki Azuma et al.   PLANT AND CELL PHYSIOLOGY

Engineering cyanobacteria to generate high-value products

(2011) Daniel C. Ducat et al.   TRENDS IN BIOTECHNOLOGY

Redirecting Reductant Flux into Hydrogen Production via Metabolic Engineering of Fermentative Carbon Metabolism in a Cyanobacterium

(2010) K. McNeely et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

General stress response in α-proteobacteria: PhyR and beyond

(2010) Anna Staroń et al.   MOLECULAR MICROBIOLOGY

ChlH, the H subunit of the Mg-chelatase, is an anti-sigma factor for SigE in Synechocystis sp. PCC 6803

(2009) T. Osanai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

gTME for Improved Xylose Fermentation of Saccharomyces cerevisiae

(2008) Hongmei Liu et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Assessing the potential of mutational strategies to elicit new phenotypes in industrial strains

(2008) D. Klein-Marcuschamer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA