Microbial communities in crop phyllosphere and root endosphere are more resistant than soil microbiota to fertilization

Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor)

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Influence of Plant Fraction, Soil, and Plant Species on Microbiota: a Multikingdom Comparison

(2020) Andrzej Tkacz et al.   mBio

Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics

(2020) Cheng Gao et al.   Nature Communications

Microbiome-Mediated Stress Resistance in Plants

(2020) Hongwei Liu et al.   TRENDS IN PLANT SCIENCE

The Plant Microbiome: From Ecology to Reductionism and Beyond

(2020) Connor R. Fitzpatrick et al.   Annual Review of Microbiology

Soil bacterial taxonomic diversity is critical to maintaining the plant productivity

(2020) Qing-Lin Chen et al.   ENVIRONMENT INTERNATIONAL

Industrial development as a key factor explaining variances in soil and grass phyllosphere microbiomes in urban green spaces

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(2020) Pankaj Trivedi et al.   NATURE REVIEWS MICROBIOLOGY

Heterosis of leaf and rhizosphere microbiomes in field‐grown maize

(2020) Maggie R. Wagner et al.   NEW PHYTOLOGIST

Crop microbiome and sustainable agriculture

(2020) Brajesh K. Singh et al.   NATURE REVIEWS MICROBIOLOGY

Plant Defense by VOC-Induced Microbial Priming

(2019) Hongwei Liu et al.   TRENDS IN PLANT SCIENCE

New frontiers in agriculture productivity: Optimised microbial inoculants and in situ microbiome engineering

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Response of the eukaryotic plankton community to the cyanobacterial biomass cycle over 6 years in two subtropical reservoirs

(2019) Lemian Liu et al.   ISME Journal

A few Ascomycota taxa dominate soil fungal communities worldwide

(2019) Eleonora Egidi et al.   Nature Communications

Plant–microbe specificity varies as a function of elevation

(2019) Gerald M. Cobian et al.   ISME Journal

Transfer of antibiotic resistance from manure-amended soils to vegetable microbiomes

(2019) Yu-Jing Zhang et al.   ENVIRONMENT INTERNATIONAL

Initial soil microbiome composition and functioning predetermine future plant health

(2019) Zhong Wei et al.   Science Advances

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

(2019) Charlotte I. Carlström et al.   Nature Ecology & Evolution

Floral organs act as environmental filters and interact with pollinators to structure the yellow monkeyflower ( Mimulus guttatus ) floral microbiome

(2019) María Rebolleda Gómez et al.   MOLECULAR ECOLOGY

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation

(2018) Chao Ai et al.   GEODERMA

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A global atlas of the dominant bacteria found in soil

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Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming

(2018) Kyle Hartman et al.   Microbiome

Fertilization strategy can affect the estimation of soil nitrogen mineralization potential with chemical methods

(2018) Nicolas Wyngaard et al.   PLANT AND SOIL

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

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It is elemental: soil nutrient stoichiometry drives bacterial diversity

(2017) Manuel Delgado-Baquerizo et al.   ENVIRONMENTAL MICROBIOLOGY

Plant diversity represents the prevalent determinant of soil fungal community structure across temperate grasslands in northern China

(2017) Yong-Liang Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Inner Plant Values: Diversity, Colonization and Benefits from Endophytic Bacteria

(2017) Hongwei Liu et al.   Frontiers in Microbiology

Harnessing microbiome-based biotechnologies for sustainable mitigation of nitrous oxide emissions

(2017) Hang-Wei Hu et al.   Microbial Biotechnology

Tiny Microbes, Big Yields: enhancing food crop production with biological solutions

(2017) Pankaj Trivedi et al.   Microbial Biotechnology

Changes in activity and structure of the soil microbial community after application of azoxystrobin or pirimicarb and an organic amendment to an agricultural soil

(2016) Alba Álvarez-Martín et al.   APPLIED SOIL ECOLOGY

Diversity and functional traits of culturable microbiome members, including cyanobacteria in the rice phyllosphere

(2016) S. Venkatachalam et al.   PLANT BIOLOGY

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

Microbiome and Exudates of the Root and Rhizosphere of Brachypodium distachyon, a Model for Wheat

(2016) Akitomo Kawasaki et al.   PLoS One

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Nitrogen and phosphorus fertilization with crop residue retention enhances crop productivity, soil organic carbon, and total soil nitrogen concentrations in sandy-loam soils in Ghana

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Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Influence of 34-years of fertilization on bacterial communities in an intensively cultivated black soil in northeast China

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Sweet sorghum as a bioenergy crop: Literature review

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Water addition regulates the metabolic activity of ammonia oxidizers responding to environmental perturbations in dry subhumid ecosystems

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Intensive agriculture reduces soil biodiversity across Europe

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(2014) Richard D. Bardgett et al.   NATURE

21st century agriculture: integration of plant microbiomes for improved crop production and food security

(2014) Angela Sessitsch et al.   Microbial Biotechnology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Organic fertilizer effects on growth, crop yield, and soil microbial biomass indices in sole and intercropped peas and oats under organic farming conditions

(2013) Ramia Jannoura et al.   EUROPEAN JOURNAL OF AGRONOMY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Unravelling Soil Fungal Communities from Different Mediterranean Land-Use Backgrounds

(2012) Alberto Orgiazzi et al.   PLoS One

Impacts of Organic and Conventional Crop Management on Diversity and Activity of Free-Living Nitrogen Fixing Bacteria and Total Bacteria Are Subsidiary to Temporal Effects

(2012) Caroline H. Orr et al.   PLoS One

Land use alters the resistance and resilience of soil food webs to drought

(2012) Franciska T. de Vries et al.   Nature Climate Change

Examining the global distribution of dominant archaeal populations in soil

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QIIME allows analysis of high-throughput community sequencing data

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Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots

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