The microbial network property as a bio-indicator of antibiotic transmission in the environment

Variation of antibiotic resistome during commercial livestock manure composting

(2020) Min Zhang et al.   ENVIRONMENT INTERNATIONAL

Fifteen-Year Application of Manure and Chemical Fertilizers Differently Impacts Soil ARGs and Microbial Community Structure

(2020) Fenghua Wang et al.   Frontiers in Microbiology

Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance

(2020) Linwei Wu et al.   mSystems

Deterministic Assembly and Diversity Gradient Altered the Biofilm Community Performances of Bioreactors

(2019) Zhaojing Zhang et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities

(2019) Zhou Shi et al.   mSystems

Antibiotic Pollution in the Environment: From Microbial Ecology to Public Policy

(2019) Susanne A. Kraemer et al.   Microorganisms

Transfer of antibiotic resistance from manure-amended soils to vegetable microbiomes

(2019) Yu-Jing Zhang et al.   ENVIRONMENT INTERNATIONAL

A general framework for quantitatively assessing ecological stochasticity

(2019) Daliang Ning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The scale dependence of fungal community distribution in paddy soil driven by stochastic and deterministic processes

(2019) Jianshu Zhao et al.   Fungal Ecology

Fundamental contradictions among observational and experimental estimates of non-trophic species interactions

(2018) Allison K. Barner et al.   ECOLOGY

Investigating antibiotics, antibiotic resistance genes, and microbial contaminants in groundwater in relation to the proximity of urban areas

(2018) Edina Szekeres et al.   ENVIRONMENTAL POLLUTION

Understanding the Mechanisms Behind the Response to Environmental Perturbation in Microbial Mats: A Metagenomic-Network Based Approach

(2018) Valerie De Anda et al.   Frontiers in Microbiology

Network of microbial and antibiotic interactions drive colonization and infection with multidrug-resistant organisms

(2017) Joyce Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Disentangling Interactions in the Microbiome: A Network Perspective

(2017) Mehdi Layeghifard et al.   TRENDS IN MICROBIOLOGY

Microbiome Datasets Are Compositional: And This Is Not Optional

(2017) Gregory B. Gloor et al.   Frontiers in Microbiology

Antibiotic resistance in the food supply chain: where can sequencing and metagenomics aid risk assessment?

(2017) Johan Bengtsson-Palme   Current Opinion in Food Science

Dynamics of archaea at fine spatial scales in Shark Bay mat microbiomes

(2017) Hon Lun Wong et al.   Scientific Reports

Regulation and Role of Fungal Secondary Metabolites

(2016) Juliane Macheleidt et al.   Annual Review of Genetics

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

(2016) Sophie Weiss et al.   ISME Journal

Minimal selective concentrations of tetracycline in complex aquatic bacterial biofilms

(2016) Sara V. Lundström et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics

(2016) Johan Bengtsson-Palme et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Long-term successional dynamics of microbial association networks in anaerobic digestion processes

(2016) Linwei Wu et al.   WATER RESEARCH

The microbe-mediated mechanisms affecting topsoil carbon stock in Tibetan grasslands

(2015) Haowei Yue et al.   ISME Journal

Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes

(2015) Bing Li et al.   ISME Journal

Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests

(2015) Junjun Ding et al.   MOLECULAR ECOLOGY

Counteraction of antibiotic production and degradation stabilizes microbial communities

(2015) Eric D. Kelsic et al.   NATURE

Antibiotic resistance genes in the environment: prioritizing risks

(2015) Johan Bengtsson-Palme et al.   NATURE REVIEWS MICROBIOLOGY

Antibiotic resistance gene discovery in food-producing animals

(2014) Heather K Allen   CURRENT OPINION IN MICROBIOLOGY

The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry

(2014) Shanshan Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology

(2014) Molly K Gibson et al.   ISME Journal

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anaerobes and Bacterial Vaginosis in Pregnancy: Virulence Factors Contributing to Vaginal Colonisation

(2014) Charlene Africa et al.   International Journal of Environmental Research and Public Health

Bacteriophages as Vehicles for Antibiotic Resistance Genes in the Environment

(2014) Jose Luis Balcazar   PLoS Pathogens

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India

(2014) Johan Bengtsson-Palme et al.   Frontiers in Microbiology

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Potential of Biological Processes to Eliminate Antibiotics in Livestock Manure: An Overview

(2014) Daniel Massé et al.   Animals

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: A review

(2013) L. Rizzo et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Increasing functional modularity with residence time in the co-distribution of native and introduced vascular plants

(2013) Cang Hui et al.   Nature Communications

Food and human gut as reservoirs of transferable antibiotic resistance encoding genes

(2013) Jean-Marc Rolain   Frontiers in Microbiology

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Social interaction in synthetic and natural microbial communities

(2011) J. B. Xavier   Molecular Systems Biology

Systemic risk in banking ecosystems

(2011) Andrew G. Haldane et al.   NATURE

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Bacterial charity work leads to population-wide resistance

(2010) Henry H. Lee et al.   NATURE

Functional Molecular Ecological Networks

(2010) J. Zhou et al.   mBio

Phylogenetic analysis of modularity in protein interaction networks

(2009) Sinan Erten et al.   BMC BIOINFORMATICS

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

(2009) Yunfeng Yang et al.   BMC GENOMICS

Quorum Sensing and the Social Evolution of Bacterial Virulence

(2009) Kendra P. Rumbaugh et al.   CURRENT BIOLOGY

Drug interactions and the evolution of antibiotic resistance

(2009) Pamela J. Yeh et al.   NATURE REVIEWS MICROBIOLOGY

Residues of veterinary antibiotics in manures from feedlot livestock in eight provinces of China

(2009) Ling Zhao et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Coexistence of Antibiotic-Producing and Antibiotic-Sensitive Bacteria in Biofilms Is Mediated by Resistant Bacteria

(2008) N. Narisawa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mistranslation of Membrane Proteins and Two-Component System Activation Trigger Antibiotic-Mediated Cell Death

(2008) Michael A. Kohanski et al.   CELL