Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities
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Title
Functional Gene Array-Based Ultrasensitive and Quantitative Detection of Microbial Populations in Complex Communities
Authors
Keywords
-
Journal
mSystems
Volume 4, Issue 4, Pages -
Publisher
American Society for Microbiology
Online
2019-06-17
DOI
10.1128/msystems.00296-19
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- (2016) Qichao Tu et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
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- (2016) Csaba Kerepesi et al. CURRENT MICROBIOLOGY
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- (2016) Kai Xue et al. mBio
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- (2016) Kai Xue et al. Nature Climate Change
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- (2016) Adam G. Clooney et al. PLoS One
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- (2015) Colin M. Fitzgerald et al. WATER RESEARCH
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- (2015) Jizhong Zhou et al. mBio
- Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors
- (2015) Mark B. Smith et al. mBio
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- (2015) Christopher L. Hemme et al. Frontiers in Microbiology
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- (2015) Kristen M. DeAngelis et al. Frontiers in Microbiology
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- (2014) Yan Xie et al. CHEMOSPHERE
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- (2014) Jizhong Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2013) Ana M. Valdes et al. NATURE REVIEWS GENETICS
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- (2013) Annalisa Ballarini et al. PLoS One
- Applications of functional gene microarrays for profiling microbial communities
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- (2012) George M. Weinstock NATURE
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- (2012) Nicholas J Loman et al. NATURE BIOTECHNOLOGY
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- (2012) Ameet J. Pinto et al. PLoS One
- Global distribution of microbial abundance and biomass in subseafloor sediment
- (2012) J. Kallmeyer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Development of functional gene microarrays for microbial community analysis
- (2011) Zhili He et al. CURRENT OPINION IN BIOTECHNOLOGY
- Development and applications of functional gene microarrays in the analysis of the functional diversity, composition, and structure of microbial communities
- (2011) Zhili He et al.
- Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments
- (2011) Etienne Yergeau et al. ISME Journal
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- (2011) Wenzong Liu et al. JOURNAL OF BIOTECHNOLOGY
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- (2009) Nikole E. Kimes et al. ENVIRONMENTAL MICROBIOLOGY
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- Spatial scaling of functional gene diversity across various microbial taxa
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