Predicting transcriptional responses to cold stress across plant species
Published 2021 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Predicting transcriptional responses to cold stress across plant species
Authors
Keywords
-
Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 118, Issue 10, Pages e2026330118
Publisher
Proceedings of the National Academy of Sciences
Online
2021-03-04
DOI
10.1073/pnas.2026330118
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs
- (2020) Xianjun Lai et al. BMC GENOMICS
- Genome–Phenome Wide Association in Maize and Arabidopsis Identifies a Common Molecular and Evolutionary Signature
- (2020) Zhikai Liang et al. Molecular Plant
- Transcriptomic Analysis Revealed the Common and Divergent Responses of Maize Seedling Leaves to Cold and Heat Stresses
- (2020) Yongsheng Li et al. Genes
- Computational translation of genomic responses from experimental model systems to humans
- (2019) Douglas K. Brubaker et al. PLoS Computational Biology
- Quantitative Trait Loci for Freezing Tolerance in a Lowland x Upland Switchgrass Population
- (2019) Hari P. Poudel et al. Frontiers in Plant Science
- The genome of broomcorn millet
- (2019) Changsong Zou et al. Nature Communications
- Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence
- (2019) Jacob D. Washburn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Robust predictions of specialized metabolism genes through machine learning
- (2019) Bethany M. Moore et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Patterns of alternative splicing in response to cold acclimation in fish
- (2019) Timothy M. Healy et al. JOURNAL OF EXPERIMENTAL BIOLOGY
- CG dinucleotides enhance promoter activity independent of DNA methylation
- (2019) Dominik Hartl et al. GENOME RESEARCH
- Identification of the expressome by machine learning on omics data
- (2019) Ryan C. Sartor et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA Methylation: Shared and Divergent Features across Eukaryotes
- (2019) Robert J. Schmitz et al. TRENDS IN GENETICS
- Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
- (2018) Andrew Rambaut et al. SYSTEMATIC BIOLOGY
- GOATOOLS: A Python library for Gene Ontology analyses
- (2018) D. V. Klopfenstein et al. Scientific Reports
- 10KP: A phylodiverse genome sequencing plan
- (2018) Shifeng Cheng et al. GigaScience
- Low-temperature tolerance in land plants: Are transcript and membrane responses conserved?
- (2018) Sunil Kumar Kenchanmane Raju et al. PLANT SCIENCE
- StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates
- (2017) Huw A. Ogilvie et al. MOLECULAR BIOLOGY AND EVOLUTION
- 3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments
- (2017) Pengfei Dong et al. Molecular Plant
- Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments
- (2017) Rajeev K Varshney et al. NATURE BIOTECHNOLOGY
- Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize
- (2017) Yang Zhang et al. PLANT CELL
- Natural variation for gene expression responses to abiotic stress in maize
- (2017) Amanda J. Waters et al. PLANT JOURNAL
- The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
- (2017) Ryan F. McCormick et al. PLANT JOURNAL
- Incomplete dominance of deleterious alleles contributes substantially to trait variation and heterosis in maize
- (2017) Jinliang Yang et al. PLoS Genetics
- PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R
- (2015) Jan Grau et al. BIOINFORMATICS
- Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability
- (2015) Michael V. Mickelbart et al. NATURE REVIEWS GENETICS
- Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
- (2015) Irina Makarevitch et al. PLoS Genetics
- Building Predictive Models inRUsing thecaretPackage
- (2015) Max Kuhn Journal of Statistical Software
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features
- (2014) J. O. Yanez-Cuna et al. GENOME RESEARCH
- BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
- (2014) Remco Bouckaert et al. PLoS Computational Biology
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Regulation of the Boundaries of Accessible Chromatin
- (2013) Xiaoran Chai et al. PLoS Genetics
- Predicting cell-type-specific gene expression from regions of open chromatin
- (2012) A. Natarajan et al. GENOME RESEARCH
- Reference genome sequence of the model plant Setaria
- (2012) Jeffrey L Bennetzen et al. NATURE BIOTECHNOLOGY
- How important are transposons for plant evolution?
- (2012) Damon Lisch NATURE REVIEWS GENETICS
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- G+C content dominates intrinsic nucleosome occupancy
- (2009) Desiree Tillo et al. BMC BIOINFORMATICS
- Unexpected consequences of a sudden and massive transposon amplification on rice gene expression
- (2009) Ken Naito et al. NATURE
- More Productive Than Maize in the Midwest: How Does Miscanthus Do It?
- (2009) F. G. Dohleman et al. PLANT PHYSIOLOGY
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- Disruption of the Arabidopsis Circadian Clock Is Responsible for Extensive Variation in the Cold-Responsive Transcriptome
- (2008) Z. Bieniawska et al. PLANT PHYSIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now