Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs
Authors
Keywords
-
Journal
BMC GENOMICS
Volume 21, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2020-06-25
DOI
10.1186/s12864-020-06824-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Guidelines for Genome-Scale Analysis of Biological Rhythms
- (2017) Michael E. Hughes et al. JOURNAL OF BIOLOGICAL RHYTHMS
- Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize
- (2017) Yang Zhang et al. PLANT CELL
- Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon
- (2017) Satoru Koda et al. Frontiers in Plant Science
- Systems analysis ofcis-regulatory motifs in C4photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation
- (2016) Jiajia Xu et al. JOURNAL OF EXPERIMENTAL BOTANY
- Circadian regulation of sunflower heliotropism, floral orientation, and pollinator visits
- (2016) Hagop S. Atamian et al. SCIENCE
- The Plant Circadian Clock: From a Simple Timekeeper to a Complex Developmental Manager
- (2016) Sabrina E. Sanchez et al. Cold Spring Harbor Perspectives in Biology
- Domestication selected for deceleration of the circadian clock in cultivated tomato
- (2015) Niels A Müller et al. NATURE GENETICS
- Integrating circadian dynamics with physiological processes in plants
- (2015) Kathleen Greenham et al. NATURE REVIEWS GENETICS
- Barley Hv CIRCADIAN CLOCK ASSOCIATED 1 and Hv PHOTOPERIOD H1 Are Circadian Regulators That Can Affect Circadian Rhythms in Arabidopsis
- (2015) Jelena Kusakina et al. PLoS One
- Allelic polymorphism ofGIGANTEAis responsible for naturally occurring variation in circadian period inBrassica rapa
- (2015) Qiguang Xie et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Circadian regulation of abiotic stress tolerance in plants
- (2015) Jack Grundy et al. Frontiers in Plant Science
- Glycoprotein composition along the pistil of Malus x domestica and the modulation of pollen tube growth
- (2014) Juan M Losada et al. BMC PLANT BIOLOGY
- A Distorted Circadian Clock Causes Early Flowering and Temperature-Dependent Variation in Spike Development in theEps-3AmMutant of Einkorn Wheat
- (2014) Piotr Gawroński et al. GENETICS
- The F-box protein ZEITLUPE controls stability and nucleocytoplasmic partitioning of GIGANTEA
- (2013) Jeongsik Kim et al. DEVELOPMENT
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- HvLUX1is a candidate gene underlying theearly maturity 10locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways
- (2013) Chiara Campoli et al. NEW PHYTOLOGIST
- The circadian clock-associated genegigantea1affects maize developmental transitions
- (2013) CLAIRE BENDIX et al. PLANT CELL AND ENVIRONMENT
- Beyond Arabidopsis: The circadian clock in non-model plant species
- (2013) C. Robertson McClung SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Wheels within wheels: the plant circadian system
- (2013) Polly Yingshan Hsu et al. TRENDS IN PLANT SCIENCE
- SSR markers in transcripts of genes linked to post-transcriptional and transcriptional regulatory functions during vegetative and reproductive development of Elaeis guineensis
- (2012) Timothy Tranbarger et al. BMC PLANT BIOLOGY
- Complexity in the Wiring and Regulation of Plant Circadian Networks
- (2012) Dawn H. Nagel et al. CURRENT BIOLOGY
- LOV Domain-Containing F-Box Proteins: Light-Dependent Protein Degradation Modules in Arabidopsis
- (2012) Shogo Ito et al. Molecular Plant
- OsELF3 Is Involved in Circadian Clock Regulation for Promoting Flowering under Long-Day Conditions in Rice
- (2012) Ying Yang et al. Molecular Plant
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- Preferential Retention of Circadian Clock Genes during Diploidization following Whole Genome Triplication inBrassica rapa
- (2012) Ping Lou et al. PLANT CELL
- Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) to short growing seasons
- (2012) S. Faure et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Screening synteny blocks in pairwise genome comparisons through integer programming
- (2011) Haibao Tang et al. BMC BIOINFORMATICS
- LUX ARRHYTHMO Encodes a Nighttime Repressor of Circadian Gene Expression in the Arabidopsis Core Clock
- (2011) Anne Helfer et al. CURRENT BIOLOGY
- Gene Coexpression Network Alignment and Conservation of Gene Modules between Two Grass Species: Maize and Rice
- (2011) S. P. Ficklin et al. PLANT PHYSIOLOGY
- Genes Identified by Visible Mutant Phenotypes Show Increased Bias toward One of Two Subgenomes of Maize
- (2011) James C. Schnable et al. PLoS One
- Global Profiling of Rice and Poplar Transcriptomes Highlights Key Conserved Circadian-Controlled Pathways and cis-Regulatory Modules
- (2011) Sergei A. Filichkin et al. PLoS One
- Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
- (2011) J. C. Schnable et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes
- (2011) Rebecca M. Davidson et al. Plant Genome
- The Regulation of Gene Expression Required for C4Photosynthesis
- (2010) Julian M. Hibberd et al. Annual Review of Plant Biology
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
- Coordination of the maize transcriptome by a conserved circadian clock
- (2010) Sadaf Khan et al. BMC PLANT BIOLOGY
- Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution
- (2010) F. Murat et al. GENOME RESEARCH
- JTK_CYCLE: An Efficient Nonparametric Algorithm for Detecting Rhythmic Components in Genome-Scale Data Sets
- (2010) Michael E. Hughes et al. JOURNAL OF BIOLOGICAL RHYTHMS
- Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence data
- (2010) M. J. Palumbo et al. NUCLEIC ACIDS RESEARCH
- PSEUDO-RESPONSE REGULATORS 9, 7, and 5 Are Transcriptional Repressors in the Arabidopsis Circadian Clock
- (2010) N. Nakamichi et al. PLANT CELL
- The Association of Multiple Interacting Genes with Specific Phenotypes in Rice Using Gene Coexpression Networks
- (2010) Stephen P. Ficklin et al. PLANT PHYSIOLOGY
- Maize Global Transcriptomics Reveals Pervasive Leaf Diurnal Rhythms but Rhythms in Developing Ears Are Largely Limited to the Core Oscillator
- (2010) Kevin R. Hayes et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Regularized gene selection in cancer microarray meta-analysis
- (2009) Shuangge Ma et al. BMC BIOINFORMATICS
- Integrating ELF4 into the circadian system through combined structural and functional studies
- (2009) Elsebeth Kolmos et al. HFSP Journal
- Foxtail Millet: A Sequence-Driven Grass Model System
- (2009) A. N. Doust et al. PLANT PHYSIOLOGY
- Angiosperm genome comparisons reveal early polyploidy in the monocot lineage
- (2009) H. Tang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analysis of clock gene homologs using unifoliolates as target organs in soybean (Glycine max)
- (2008) Hua Liu et al. JOURNAL OF PLANT PHYSIOLOGY
- Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids
- (2008) Zhongfu Ni et al. NATURE
- Network Discovery Pipeline Elucidates Conserved Time-of-Day–Specific cis-Regulatory Modules
- (2008) Todd P. Michael et al. PLoS Genetics
- Diurnal and Circadian Rhythms in the Tomato Transcriptome and Their Modulation by Cryptochrome Photoreceptors
- (2008) Paolo Facella et al. PLoS One
- A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth
- (2008) Todd P Michael et al. PLOS BIOLOGY
- Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
- (2008) Michael F Covington et al. GENOME BIOLOGY
- Conserved Daily Transcriptional Programs in Carica papaya
- (2008) Anna Zdepski et al. Tropical Plant Biology
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More