Distinct bacterial community compositions in the Populus rhizosphere under three types of organic matter input across different soil types

Niche differentiation is spatially and temporally regulated in the rhizosphere

(2020) Erin E. Nuccio et al.   ISME Journal

Occurrence of the potent mutagens 2- nitrobenzanthrone and 3-nitrobenzanthrone in fine airborne particles

(2019) Aldenor G. Santos et al.   Scientific Reports

Effect of sulfur and sulfur-iron modified biochar on cadmium availability and transfer in the soil–rice system

(2019) Manikandan Rajendran et al.   CHEMOSPHERE

Competitive interaction with keystone taxa induced negative priming under biochar amendments

(2019) Lijun Chen et al.   Microbiome

Role of Vertical Transmission of Shoot Endophytes in Root-Associated Microbiome Assembly and Heavy Metal Hyperaccumulation in Sedum alfredii

(2019) Jipeng Luo et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Long-term manure application increases soil organic matter and aggregation, and alters microbial community structure and keystone taxa

(2019) Yongxin Lin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of fungal–bacterial community and network to organic inputs vary among different spatial habitats in soil

(2018) Wei Zheng et al.   SOIL BIOLOGY & BIOCHEMISTRY

Organic amendments increase crop yields by improving microbe-mediated soil functioning of agroecosystems: A meta-analysis

(2018) Gongwen Luo et al.   SOIL BIOLOGY & BIOCHEMISTRY

Grapevine rootstocks shape underground bacterial microbiome and networking but not potential functionality

(2018) Ramona Marasco et al.   Microbiome

Long-term application of manure over plant residues mitigates acidification, builds soil organic carbon and shifts prokaryotic diversity in acidic Ultisols

(2018) Guiping Ye et al.   APPLIED SOIL ECOLOGY

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

Wheat rhizosphere harbors a less complex and more stable microbial co-occurrence pattern than bulk soil

(2018) Kunkun Fan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

(2017) Lucas William Mendes et al.   ISME Journal

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

(2017) Juan E Pérez-Jaramillo et al.   ISME Journal

Organic amendments: Effect on carbon mineralization and crop productivity in acidic soil

(2017) Banashree Sarma et al.   JOURNAL OF CLEANER PRODUCTION

Biodiversity and species competition regulate the resilience of microbial biofilm community

(2017) Kai Feng et al.   MOLECULAR ECOLOGY

Bacterial rather than fungal community composition is associated with microbial activities and nutrient-use efficiencies in a paddy soil with short-term organic amendments

(2017) Junjie Guo et al.   PLANT AND SOIL

The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages

(2016) Shengjing Shi et al.   ECOLOGY LETTERS

Grafting Resulted in a Distinct Proteomic Profile of Watermelon Root Exudates Relative to the Un-Grafted Watermelon and the Rootstock Plant

(2016) Yang Song et al.   JOURNAL OF PLANT GROWTH REGULATION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Optimal network topology for structural robustness based on natural connectivity

(2016) Guan-sheng Peng et al.   PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS

Insight into how organic amendments can shape the soil microbiome in long-term field experiments as revealed by network analysis

(2016) Ning Ling et al.   SOIL BIOLOGY & BIOCHEMISTRY

Engineering the Rhizosphere

(2016) Yves Dessaux et al.   TRENDS IN PLANT SCIENCE

Responses of microbial activity, abundance, and community in wheat soil after three years of heavy fertilization with manure-based compost and inorganic nitrogen

(2015) Wei Tian et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Consistent increase in abundance and diversity but variable change in community composition of bacteria in topsoil of rice paddy under short term biochar treatment across three sites from South China

(2015) Junhui Chen et al.   APPLIED SOIL ECOLOGY

Soil Microbial Responses to Biochars Varying in Particle Size, Surface and Pore Properties

(2015) Noraini M. JAAFAR et al.   PEDOSPHERE

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identifying and ameliorating nutrient limitations to reconstructing a forest ecosystem on mined land

(2015) Yvonne Nussbaumer et al.   RESTORATION ECOLOGY

Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw

(2015) Ruibo Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Changes in soil microbial community composition in response to fertilization of paddy soils in subtropical China

(2014) Wen-Yi Dong et al.   APPLIED SOIL ECOLOGY

A meta-analysis on pyrogenic organic matter induced priming effect

(2014) Bernardo Maestrini et al.   Global Change Biology Bioenergy

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

The role of soil microbes in the global carbon cycle: tracking the below-ground microbial processing of plant-derived carbon for manipulating carbon dynamics in agricultural systems

(2014) Christos Gougoulias et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

(2014) Kateryna Zhalnina et al.   MICROBIAL ECOLOGY

Towards a holistic understanding of the beneficial interactions across thePopulusmicrobiome

(2014) Stéphane Hacquard et al.   NEW PHYTOLOGIST

Land-use conversion and changing soil carbon stocks in China's ‘Grain-for-Green’ Program: a synthesis

(2013) Lei Deng et al.   GLOBAL CHANGE BIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Effect of the nursery application of bioorganic fertilizer on spatial distribution of Fusarium oxysporum f. sp. niveum and its antagonistic bacterium in the rhizosphere of watermelon

(2012) Ning Ling et al.   APPLIED SOIL ECOLOGY

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Pseudomonas fluorescensInduces Strain-Dependent and Strain-Independent Host Plant Responses in Defense Networks, Primary Metabolism, Photosynthesis, and Fitness

(2012) David J. Weston et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Addition of organic and inorganic P sources to soil – Effects on P pools and microorganisms

(2012) Muhammad Asghar Malik et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biochar effects on soil biota – A review

(2011) Johannes Lehmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biodegradation of naphthalene and anthracene by chemo-tactically active rhizobacteria of populus deltoides

(2010) Sandeep Bisht et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Effect of water erosion and cultivation on the soil carbon stock in a semiarid area of South-East Spain

(2008) M MARTINEZMENA et al.   SOIL & TILLAGE RESEARCH

Soil quality and barley growth as influenced by the land application of two compost types

(2007) R.G. Courtney et al.   BIORESOURCE TECHNOLOGY